Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1259 TTGCGAGCACACATACACACTCATCCCTCGTTTTTTCGCATATTTCACTGTCTCTCTCTTCCAACCCTAACCTTAATAATCACAATTCATAACCCCAATTCCCATCTCCCCAAACCAAAACAATCTCAAAATCAAAACCCTAACAATTCCAACGATTCAATCCACACTCACGCGATGGACTCACAACAGAGCAATCTATTCGATACCGTTTCCCAACCCGACCCAGGCAACGACGCCTACGCTTTCCTCGAATTCAATACTCAGGGCGAGGATTTCGACTATCCCGAGTTCTGCGACCCGATTAGGTCACCGGTTTCATGGCCCACGCCCTCCGATTCGCTCGCTGAACCCTCGGAGCGCGGCGGTGGAGGTGGCGGAGCTGGGTCTGATCACCAGTCTGATGCGTCGCCTGTATCAGCAGCTCCAGGGAGTGCGACGAAAGGGCGGTCTGGAAGTAGCGGTGGCGGAGGGAATAGCCAGATGGTGGATGCGCTGCTTCCGGGGATGAGCGGGTTGAATTTTGAGGACACCGGTGATGACGATAATTTCGAGTATGGTAAGGGTGATTTTACTGAACATGCTTGCAGATATTGTGGTGTTTCCAATCCAGCGTGTGTTGTGAGGTGCAACGTGCCTTCTTGTCGCAAATGGTTCTGTAATTCTCGCGGGAACACTTCTGGATCACATATCGTAAATCACCTGGTTCGCGCAAAACACAAGGAAGTCTGTCTACACAAAGATAGTCCGTTGGGAGAAACAATTCTTGAATGCTACAACTGTGGGTGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCCAAGACTGAAAGTGTAGTTGTTCTTCTTTGTCGTGAACCTTGTTTGAGTGTCAATGCATTGAAGGACATGAATTGGGACCTTAGCCAATGGTGTCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTAAAGGTCCCATCTGAACAAGAGCAGTTAAGGGCACGCCAAATAAGTGCGCAACAAATAAATAAGGTGGAAGAGTTGTGGAAGACAAATCCTGACGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAATCTGTGGCTTTGAAATACGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTTATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATATCACAATTCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCGTACTTTGTTTTCCCAAAGGAAGATAATGAGTTGCGACTTGTACCTGGTGATGAATTACGATTGCGCTATTCGGGTGATGCTGCACATCCTGCATGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCTCAAGAAGAAGTTGCACTGGAGCTCCGTGCTAGCCAGGGGGTGCCAGTTGATGTAAACCATGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGCTTTGATAGGATGCAGGGTGCTATGAAAACCTTTGCTGTGGATGAGACGAGTGTAAGCGGGTATATTTATCATCATTTATTGGGTCATGAAGTCGAGGTTCAGATGGTGCGTAATGCATTGCCTCGCCGCTTTGGTGCACCTGGCCTTCCAGAACTCAATGCATCTCAAGTTTTTGCCGTGAAAAGTGTTCTCCAGAGGCCTATTAGTTTGATTCAAGGTCCACCTGGAACTGGTAAGACTGTAACTTCTGCAGCACTTGTGTATCACATGGCCAAGCAAGGTCAAGGACAGGTTTTGGTTTGTGCACCTAGTAATGTGGCTGTGGACCAACTGGCTGAAAAGATAAGTGCTACTGGATTGAAGGTTGTGAGGCTCTGTGCAAAGTCGAGGGAAGCTGTGAGTTCTCCTGTTGAGCATTTAACGCTTCACTATCAGGTTCGACATCTTGACACATCTGACAAGAGTGAACTTCACAAGTTACAAATGCTTAAAGATGAACAAGGAGAACTTTCTAGCAGTGATGAAAAAAAGTATAAAGCACTTAAGCGAGCAACAGAGAGGGAGATTTCTCAAAGTGCTGATGTGATATGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTAGCAAATTTTAGGTTCCGTCAGGTACTTATTGACGAGTCCACTCAAGCAACAGAGCCTGAATGTCTCATTCCTTTGGTTCTTGGGGTGAAGCAGGTTGTTCTTGTGGGTGATCATTGTCAGCTTGGTCCTGTCATTATGTGCAAGAAAGCAGCCCGTGCTGGGCTAGCTCAGTCACTTTTTGAACGCCTTGTTATACTTGGCGTCAAGCCAATTAGGTTGCAGGTTCAGTACCGTATGCATCCATGCCTTTCAGAATTTCCGTCTAACAGCTTTTATGAAGGCACCCTGCAAAATGGAGTCACTGTTAATGAAAGGCAGACAACAGGAATTGATTTTCCATGGCCTGTGCCAAACCGTCCCATGTTCTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGCGGAACATCTTATTTAAATAGGACTGAGGCTGCAAATGTTGAAAAGATTGTAACCACTTTCTTAAAAAGTGGTGTTGTCCCAAGTCAGATCGGTGTTATAACACCGTATGAGGGGCAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTTCTCTCAGACAGCAACTTTACAAGGAGATTGAGGTGGCTAGTGTTGACTCCTTTCAAGGAAGGGAGAAAGACTACATCATTCTTTCATGTGTTAGAAGTAATGAACATCAGGGCATTGGATTTCTGAATGATCCGAGAAGGCTCAATGTTGCTTTAACACGAGCAAGATATGGTATTGTAATTCTGGGAAACCCTAAAGTTCTAAGCAAGCAACCCCTTTGGAATGGCTTATTAACACACTACAAGGAACATGAATGCTTAGTAGAAGGGCCTTTAAACAATTTGAAGCAGAGTATGGTTCAGTTCCAGAAACCCAAAAAGATTTACAATGAAAGGAGGCTTTTTTATGGGGGTGGACCTGGAGTTGCAGCTAGTGATAATATTGGTTCTGGTACTGGTGCAACTTCAGATCGAAGGTCCGGCCGAGGAAGAGGCTCTTATATACCTCATGGACCACCAAATGGAACCCATAAGCCTGGCGTGCATCCTGCTGGGTATACTCTGCCTAGAGTTCCCTTGCATCCTTTTCATGGTGGCCCCCAATCTCAACCATATGCAATTCCATCTCGTGGAGCTGTACATGGACCTGTTGGGGCGGTTCCTCATGTACCATCTCCAGGGAGTCGGGGTTTTGGGGCTGGGAGAGGTAACACTGGTGCTCCAATTGGCAATCATCTTCCGCACCAGCAAGGTACACCGCAATCTGTTGGGAATATTGGATCCACGTTTAACTTCCCAGCTCTGGAGAATCCTAACAGCCAGTCATCTGTTGGTGGTCCATTGTCTCAACCTGGGTTTGCTAATAATATGTCGGTCCAAGGGGCGAGCCAGACATTTCGTGATCAGTTCTCGGTACCCGGAATGTCTCAGGACTTCTTGGGCGATGACTTTAAAAGCCAGGGATCTCATGTTCCTTATAATGTTGCTGATTTCTCTACACAGGCTTCTCAATCTGTATATGCTGTTGATTATGCTACACAAGGAGCACAAGGTGGATTCCCAGGGAACTTCCTGAACCAGAATTCTCAAGCTGGGTATTCGCGCTTTGGTTCCGGAAATGACTTCCTGTCTCAGGACTACATGGCCCATGGATCACCAGGTCTTTTTACTCAGGCTGGATTCACCGATCCCTTGCAAGATGACGCAACACAAAGCCAATTTGGTGTGGCCAATCCCAATGCTCTTCAGTCCCAGATGAATCCACTCTATTCCCAGCCTTTTGCTCACTACAACACACAGCCGCTGAACTTACAGGCTTCCCAGCAGCAGTCTCAGGGTCAGAGCTCCCCAAATCAGAAAATTCACTATAAAAGTTAA 3975 0.4589 MRAHIHTHPSFFRIFHCLSLPTLTLIITIHNPNSHLPKPKQSQNQNPNNSNDSIHTHAMDSQQSNLFDTVSQPDPGNDAYAFLEFNTQGEDFDYPEFCDPIRSPVSWPTPSDSLAEPSERGGGGGGAGSDHQSDASPVSAAPGSATKGRSGSSGGGGNSQMVDALLPGMSGLNFEDTGDDDNFEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNITIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQMLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVILGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQTTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGVAASDNIGSGTGATSDRRSGRGRGSYIPHGPPNGTHKPGVHPAGYTLPRVPLHPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNTGAPIGNHLPHQQGTPQSVGNIGSTFNFPALENPNSQSSVGGPLSQPGFANNMSVQGASQTFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSVYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFLSQDYMAHGSPGLFTQAGFTDPLQDDATQSQFGVANPNALQSQMNPLYSQPFAHYNTQPLNLQASQQQSQGQSSPNQKIHYKS 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1259 1324 CDD 1B_UPF1-like 399 486 IPR040812 -
Lal23g1259 1324 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 552 684 IPR014001 -
Lal23g1259 1324 Gene3D - 507 777 IPR027417 -
Lal23g1259 1324 MobiDBLite consensus disorder prediction 34 56 - -
Lal23g1259 1324 Pfam Type III restriction enzyme, res subunit 549 611 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lal23g1259 1324 CDD ZBD_UPF1-like 194 316 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lal23g1259 1324 Pfam AAA domain 756 951 IPR041679 -
Lal23g1259 1324 MobiDBLite consensus disorder prediction 1012 1049 - -
Lal23g1259 1324 MobiDBLite consensus disorder prediction 93 162 - -
Lal23g1259 1324 MobiDBLite consensus disorder prediction 1299 1324 - -
Lal23g1259 1324 Gene3D - 399 487 - -
Lal23g1259 1324 MobiDBLite consensus disorder prediction 1109 1148 - -
Lal23g1259 1324 MobiDBLite consensus disorder prediction 132 159 - -
Lal23g1259 1324 PANTHER DNA2/NAM7 HELICASE FAMILY 169 1073 IPR045055 -
Lal23g1259 1324 MobiDBLite consensus disorder prediction 1089 1148 - -
Lal23g1259 1324 Pfam AAA domain 650 746 IPR041677 GO:0004386
Lal23g1259 1324 CDD SF1_C_Upf1 779 968 IPR041679 -
Lal23g1259 1324 Gene3D - 629 681 - -
Lal23g1259 1324 Pfam RNA helicase (UPF2 interacting domain) 193 346 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lal23g1259 1324 Pfam RNA helicase UPF1, 1B domain 398 487 IPR040812 -
Lal23g1259 1324 Gene3D - 778 989 IPR027417 -
Lal23g1259 1324 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 169 1073 - -
Lal23g1259 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 540 1002 IPR027417 -
Lal23g1259 1324 CDD DEXXQc_UPF1 543 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1259 Lal-Chr23 13702313 13714337 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1259 K14326 - gmx:100795594 2364.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1259 23 13702313 13714337 Lal23g1259 23 13702313 13714337 ECH
Lal16g0294 16 1747889 1759775 Lal23g1259 23 13702313 13714337 LSH
Lal15g0230 15 1545403 1559876 Lal23g1259 23 13702313 13714337 LSH