Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0294 ATGGACTCACAGCAGAGCAATCTTTTCGACACGGCTTCGCAACCCGACACAGGCAACGACGCCTACACTTTTCTTGAATTCAACACTCAGGGCGAGGATTTCAACTACCCGGAGTTCCGCGACCCGACTAGGTCCCCGGTGTCGTGGCCCACGCCATCTGGTTCACTTTCTGAACCCTCTGACCGCGGAGGTGGAGGTGGCGGAGCTGTGTCCGATCACCAGTCTGATGCCTCGCCTGTTTCGACCGCTCCGGGAAGTGCGACGAAGGGGAGGTCAGGAAGCAGCAGCGGCGGAGGGAATAGTCAGATGGTGGATGCGCTGGTGCTGGGGATAAGCGGGTTGAATTTTGAGGACACCGCTGATGACAATAACTTTGATTATGGCAAGGGAGATTTCACTGAACATGCTTGCAAGTATTGTGGTGTCTCTAATCCAGCATGTGTTGTGAGGTGCAATGTTCCTTCATGTCGCAAATGGTTCTGTAATTCTCGTGGGAACACTTCTGGATCGCATGTCGTAAATCACTTGGTTCGGGCAAAACACAAGGAAGTCTGTCTGCACAAAGATAGTCCGCTGGGAGAAACAATTCTTGAATGCTACAACTGTGGGTGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCCAAGACTGAAAGTGTAGTTGTCCTTCTTTGTCGTGAACCTTGCTTGAGTATCAATGCATTGAAGGACATGAATTGGGACCTTAGCCAATGGTGTCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTCGTCAAGGTCCCATCTGAACAAGAGCAGTTAAGGGCACGCCAAATAAGTGCGCAGCAAATAAATAAGGTGGAAGAGTTGTGGAAGACAAATCCCGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAATCTGTGGCACTGAAATACGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTTATCAAGCTTGAAGCCGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATATCACAATTCGATGGGATATTGGTCTTAATAAGAAGCGCGTTGCATACTTTGTTTTTCCAAAGGAAGATAACGAGTTGCGGCTTGTACCTGGTGATGAATTACGATTGCGTTATTCTGGTGATGCTGCACATCCTGCGTGGCAGTCAGTGGGTCATGTGATTAAGTTAACTGCACAAGAAGAAATTGCACTGGAGCTTCGTGGTAGTCAGGGGGTGCCAGTTGATGTAAACCATGGTTTTAGTGTTGATTTTGTGTGGAAAAGTACAAGCTTTGATAGGATGCAGGGTGCTATGAAAACCTTTGCTGTAGATGAGACAAGTGTAAGCGGGTATATTTATCATCATTTATTGGGCCATGAAGTTGAGGTTCAGATGGTGCGTAACACATTGCCTCGTCGCTTTGGTGCACCTGGGCTTCCAGAACTCAATGCATCTCAAGTTTTTGCTGTTAAAAGTGTTCTCCAGAGGCCTATTAGTTTGATTCAAGGTCCACCTGGAACTGGTAAGACTGTAACTTCTGCAGCACTTGTATATCACATGGCAAAGCAAGGTCAGGGACAGGTTTTGGTTTGTGCACCTAGTAATGTAGCTGTGGACCAGCTGGCTGAAAAGATAAGTGCTACTGGGTTGAAGGTTGTGAGGCTCTGTGCAAAGTCAAGGGAAGCTGTGAGTTCTCCTGTTGAGCATTTAACACTTCACTATCAGGTTCGACATCTTGACACATCTGACAAGAGTGAGCTTCACAAGTTACAAATGCTTAAAGATGAACAAGGAGAACTTTCTAGCAATGATGAAAAAAAATATAAAGCACTTAAACGAGCAACAGAGAGGGAGATTTCTCAAAGTGCTGATGTGATATGCTGTACATGTGCTGGTGCTGGAGATCCTCGGCTATCAAATTTTAGGTTCCGTCAGGTACTTATTGACGAGTCCACTCAAGCAACAGAACCTGAATGTCTCATTCCTTTGGTTCTTGGGGCAAAGCAGGCTGTTCTTGTAGGTGACCATTGTCAGCTTGGTCCAGTCATTATGTGCAAGAAAGCAGCTCGTGCTGGGCTTGCTCAGTCACTTTTTGAACGTCTTGTTCTACTTGGCATCAAACCAATTAGGTTGCAGGTTCAGTACCGTATGCATCCATGTCTTTCAGAATTTCCCTCAAACAGCTTTTATGAAGGTACCTTGCAAAATGGAGTCACTGTAAATGAAAGGCAATCATCAGGAATTGATTTTCCATGGCCTGTGCCAAACCGTCCCATGTTCTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCAAGCGGAACATCTTATTTAAATAGGACCGAGGCTGCAAATGTTGAAAAGATTGTAACCACTTTCTTAAAAAGTGGTGTGGTCCCGAGTCAGATCGGCGTTATAACACCATATGAGGGGCAAAGAGCTTATATTGTCAACTATATGTCAAGAAATGGTTCTCTCAGACAGCAACTTTATAAGGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTCTTTCATGTGTTAGAAGTAACGAACATCAGGGCATTGGGTTTCTCAATGATCCGAGGAGGCTCAATGTTGCTTTGACACGGGCAAGATATGGTATCGTTGTTCTGGGAAACCCTAAAGTTCTAAGCAAGCAGCCCCTGTGGAATGGCTTATTGACACACTACAAGGAACATGAATGCTTAGTCGAAGGGCCTTTGAACAATTTGAAGCAGAGTATGGTTCAGTTCCAGAAACCCAAGAAGATTTACAATGAAAGGAGGCTTTTTTATGGGGGAGGACCTGGAGTTGCAACTAATGACAATTTTGGTTCTGGTGCAACTTCAGATCGAAGGACTGGCCGTGGAAGAGGATCTTATATACCCCCTGGCCCACCAAATGGAACTCATAAGCCTGGCTTGCATCCTTCTGGGTATACAATGCCTAGAGTTCCCTTGCATCCTTTTCACGGTAGTCCCCAATCTCAACCATATGCAATCCCATCTCGTGGAGCTGTACATGGATCTGTTGGGGCAGTTCCTCATGTATCATCTCCAGGGAGTCAGGGTTTCGGGGCCGGGAGAGGTAATACCAGTGCTGCAATTGGAAATCATCTTCCGCACCAGCAAGGTACACAGCAATCTGTTGGGAATATTGGACCCACATTTAACTTCCCTGCTCTGGAGAATCCCAACAGCCAGCCATCTGTTGGTGGCCCATTATCTCAACCTGGGTTTGTTAACAATATGCCAGTCCAAGGGGCGAGCCAGTCATTTCGGGATCAGTTTTCTGTGCCTGGAATGTCTCAGGACTTCTTGGGTGATGACTTTAAAAGCCAGGGCTCTCACGTTCCTTATAATGTTGCTGATTTCTCTACACAGGCTTCTCAATCTGTATATGCTGTTGATTACGCTACACAAGGAGCACAAGGTGGATTCCCAGGGAACTTCCTGAACCAGAATTCTCAAGCTGGGTATTTGCGTTTTGGTTCTGGAAATGACTTCATGTCTCAGGTTGCTGAGGACTACATGGCCCATGGATCACCAGATCTTTTCACTCAGGCTGGATTCAGTGATCACTTGCAAGATGATGCAACACAAAGCCGTTTCAGTGTGGCCAATTCCAATGCTCTTCAGTCTCAGATGAATTCTCTCTACTCCCAGCCTTTTGCTCAATACAACACGCAATCGCTGAACTTGCAGGCTTCCCAACAGAAGTCTCAGGGTCAGGGCTCCCAAAATCAGAAAATTCACTATAATGGTTAA 3804 0.4561 MDSQQSNLFDTASQPDTGNDAYTFLEFNTQGEDFNYPEFRDPTRSPVSWPTPSGSLSEPSDRGGGGGGAVSDHQSDASPVSTAPGSATKGRSGSSSGGGNSQMVDALVLGISGLNFEDTADDNNFDYGKGDFTEHACKYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHVVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSINALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNITIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEIALELRGSQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQMLKDEQGELSSNDEKKYKALKRATEREISQSADVICCTCAGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGIKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVVLGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGVATNDNFGSGATSDRRTGRGRGSYIPPGPPNGTHKPGLHPSGYTMPRVPLHPFHGSPQSQPYAIPSRGAVHGSVGAVPHVSSPGSQGFGAGRGNTSAAIGNHLPHQQGTQQSVGNIGPTFNFPALENPNSQPSVGGPLSQPGFVNNMPVQGASQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSVYAVDYATQGAQGGFPGNFLNQNSQAGYLRFGSGNDFMSQVAEDYMAHGSPDLFTQAGFSDHLQDDATQSRFSVANSNALQSQMNSLYSQPFAQYNTQSLNLQASQQKSQGQGSQNQKIHYNG 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0294 1267 CDD DEXXQc_UPF1 485 720 - -
Lal16g0294 1267 MobiDBLite consensus disorder prediction 1 30 - -
Lal16g0294 1267 Gene3D - 341 429 - -
Lal16g0294 1267 Pfam AAA domain 698 893 IPR041679 -
Lal16g0294 1267 Gene3D - 449 719 IPR027417 -
Lal16g0294 1267 Gene3D - 571 623 - -
Lal16g0294 1267 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 111 1007 - -
Lal16g0294 1267 MobiDBLite consensus disorder prediction 1 101 - -
Lal16g0294 1267 MobiDBLite consensus disorder prediction 74 101 - -
Lal16g0294 1267 MobiDBLite consensus disorder prediction 1028 1087 - -
Lal16g0294 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 944 IPR027417 -
Lal16g0294 1267 CDD 1B_UPF1-like 341 428 IPR040812 -
Lal16g0294 1267 Pfam Type III restriction enzyme, res subunit 491 558 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lal16g0294 1267 Pfam RNA helicase (UPF2 interacting domain) 135 288 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lal16g0294 1267 MobiDBLite consensus disorder prediction 1247 1267 - -
Lal16g0294 1267 Pfam RNA helicase UPF1, 1B domain 340 429 IPR040812 -
Lal16g0294 1267 MobiDBLite consensus disorder prediction 954 984 - -
Lal16g0294 1267 MobiDBLite consensus disorder prediction 1048 1087 - -
Lal16g0294 1267 PANTHER DNA2/NAM7 HELICASE FAMILY 111 1007 IPR045055 -
Lal16g0294 1267 CDD SF1_C_Upf1 721 910 IPR041679 -
Lal16g0294 1267 Gene3D - 720 931 IPR027417 -
Lal16g0294 1267 CDD ZBD_UPF1-like 136 258 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lal16g0294 1267 Pfam AAA domain 591 688 IPR041677 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0294 Lal-Chr16 1747889 1759775 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0294 K14326 - gmx:100795594 2368.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0294 16 1747889 1759775 Lal16g0294 16 1747889 1759775 ECH
Lal16g0294 16 1747889 1759775 Lal15g0230 15 1545403 1559876 LSH
Lal16g0294 16 1747889 1759775 Lal23g1259 23 13702313 13714337 LSH