LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal23g1239	ATGTGTTGGAGTTGTTCTCTTTCTCATATGGTCATGGCTTCTTCCCAACTCCTTCTTCAGCATTTTGCGATACCACAATACTCCAACCTATGTTTCTCTCCTATTGGGAAGTTGAGTTTTGTTTCGTCTTGTAGCACATCTCGTAACATTCCCTTCACCTCAATTTCATGGAGTCACACTCTTCAAAAACATAGGCCTCATTTTGTTGTTAGAGCTGAGTCCCAACCCCAAGAAACTACTGAAAATGTTGAAGAACAAGAAGAACAAGAACAAGTTTCGGAACCCAAGCTGGCACGACAGCCTCGAGTCAAGCTTGGAAACATCATGGGGATTTTGCATAAGAGGGCAATTGAGGCATCAGAAAAGGAGAGGGCCACTCCAGATATTAGGACTGGAGATATCGTGGAAATCAAATTGGAGGTTCCTGAAAACAAACGTAGGTTGTCCATCTATAAAGGTATTGTTATCTCAAGACAAAACTCTGGCATTCATACAACTATTCGAATCCGAAGAATTATCGCCGGTGTTGGGGTTGAGATAGTCTTCCCAATTTACTCCCCAAACATCAAAGAAATCAAAGTAGTGAGCCACCGTAAGGTCCGAAGGGCAAGATTGTACTATCTACGTGACAAGCTTCCCAGACTCTCCACATTCAAATGA	660	0.4258	MCWSCSLSHMVMASSQLLLQHFAIPQYSNLCFSPIGKLSFVSSCSTSRNIPFTSISWSHTLQKHRPHFVVRAESQPQETTENVEEQEEQEQVSEPKLARQPRVKLGNIMGILHKRAIEASEKERATPDIRTGDIVEIKLEVPENKRRLSIYKGIVISRQNSGIHTTIRIRRIIAGVGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK	219

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal23g1239	219	PRINTS	Ribosomal protein L19 signature	113	142	IPR001857	GO:0003735\|GO:0005840\|GO:0006412
	Lal23g1239	219	PRINTS	Ribosomal protein L19 signature	172	195	IPR001857	GO:0003735\|GO:0005840\|GO:0006412
	Lal23g1239	219	Pfam	Ribosomal protein L19	116	213	IPR001857	GO:0003735\|GO:0005840\|GO:0006412
	Lal23g1239	219	TIGRFAM	rplS_bact: ribosomal protein bL19	117	211	IPR001857	GO:0003735\|GO:0005840\|GO:0006412
	Lal23g1239	219	SUPERFAMILY	Translation proteins SH3-like domain	116	219	IPR008991	-
	Lal23g1239	219	PANTHER	50S RIBOSOMAL PROTEIN L19-1, CHLOROPLASTIC-RELATED	52	219	-	-
	Lal23g1239	219	MobiDBLite	consensus disorder prediction	73	95	-	-
	Lal23g1239	219	Gene3D	-	103	218	IPR038657	-
	Lal23g1239	219	PANTHER	RIBOSOMAL PROTEIN L19	52	219	IPR001857	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal23g1239	Lal-Chr23	13575093	13580237	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal23g1239	K02884		-	gmx:100500328	230.335

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal16g0305	16	1837192	1843769	Lal23g1239	23	13575093	13580237	LSH