Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1201 ATGGACAAAGATTCTTCTCATAATAATCATTCTCTTTCTTCTTCTTCTTCTACTTCTTCTAATCATGTGAAGCGTTTACTTAACTTTGATCACTACACATCACCTTCTAAATCTTTATGCTATGATAGGTTCATACCTTGTAGATCCACTTCCAATTTCTCTTTATTCAATATATCACCTTCTCAAAAACACAACTCCACCCCTTATAACTCTCTTCTCCGTACGGCGTTATTTGGACCCAATGCTCCCGTTACGCCTGATAAACGGACCTCTCCTAATATTTTCCGTTACAAAACGGAGACTCATCACAACATGCATGCCCTCTCACCCTTTCTCTTCCATCATGATGCGTGTCCTGGCACCAATTACAATTATACCCCTTCTGTTAAGCCTCAAAGGAAGGTTTCTAAATCGCCTTTCAAGGTTCTGGATGCACCTGCTTTACAAGATGATTTTTATCTTAATCTTGTGGATTGGTCTTCCAATAATGTCTTGGCTGTGGGTCTGGGTAGCTGTGTTTATTTGTGGAATGCTTCTAGCAGCAAGGTGACTAGATTATGCGATCTGGGGATTGACGACTATATTTGTTCAGTTGAATGGGCTCATCGTGGTACATGCATAGCTGTTGGAACTAGCAAGGGTAAAGTGAAGATTTGGGATGCATCTCAATGCAAGATGATAAGAACGATGGAGGGTCATCGACTACGTGTTGGAGCCTTGGCCTGGAGTTCATCTACTTTGTCTTCTGGTGGCCGGGATAAGAGTATTTATCAACGAGATATACGTGTGAAGGAAGATTTTATCAGTAAACTCTCAGGGCACAAATCAGAGGTGTGTGGACTGAAATGGTCTTATGATAACCGCGAGCTAGCATCTGGAGGAAATGACAACAGATTGCTTGTTTGGAATCAACACTCAACCCAGCCTGTCCTGAAGTACTGTGAGCATACAGCGGCTGTTAAAGCCATTGCATGGTCTCCTCATGCTAATGGACTTCTTGCATCTGGGGGAGGAACTGCAGACCGATGTATTCGTTTCTGGAATACAACCACAAACTCACACTTAAGCTGTATGGACACTGGAAGTCAGCTAGCAACTCTTACAGGCCACACTTACAGAGTTCTCTATTTGGCCATTTCTCCCGATGGGCAGACTATTGTCACTGGAGCTGGAGATGAAACACTTAGGTTTTGGAATGTATTCCCTTCCCAAAAATCACAGAATGGTGAGAGTGAAATTGGAGCATTTTCTTTTGGAAGAACTACTATTAGGTGA 1275 0.4251 MDKDSSHNNHSLSSSSSTSSNHVKRLLNFDHYTSPSKSLCYDRFIPCRSTSNFSLFNISPSQKHNSTPYNSLLRTALFGPNAPVTPDKRTSPNIFRYKTETHHNMHALSPFLFHHDACPGTNYNYTPSVKPQRKVSKSPFKVLDAPALQDDFYLNLVDWSSNNVLAVGLGSCVYLWNASSSKVTRLCDLGIDDYICSVEWAHRGTCIAVGTSKGKVKIWDASQCKMIRTMEGHRLRVGALAWSSSTLSSGGRDKSIYQRDIRVKEDFISKLSGHKSEVCGLKWSYDNRELASGGNDNRLLVWNQHSTQPVLKYCEHTAAVKAIAWSPHANGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSQKSQNGESEIGAFSFGRTTIR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1201 424 SMART WD40_4 360 399 IPR001680 GO:0005515
Lal23g1201 424 SMART WD40_4 136 177 IPR001680 GO:0005515
Lal23g1201 424 SMART WD40_4 223 260 IPR001680 GO:0005515
Lal23g1201 424 SMART WD40_4 306 348 IPR001680 GO:0005515
Lal23g1201 424 SMART WD40_4 180 220 IPR001680 GO:0005515
Lal23g1201 424 SMART WD40_4 264 303 IPR001680 GO:0005515
Lal23g1201 424 Pfam WD domain, G-beta repeat 308 348 IPR001680 GO:0005515
Lal23g1201 424 Pfam WD domain, G-beta repeat 268 303 IPR001680 GO:0005515
Lal23g1201 424 Pfam WD domain, G-beta repeat 362 399 IPR001680 GO:0005515
Lal23g1201 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 367 400 - -
Lal23g1201 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 408 IPR001680 GO:0005515
Lal23g1201 424 Gene3D - 94 401 IPR015943 GO:0005515
Lal23g1201 424 PANTHER PROTEIN FIZZY-RELATED 1 361 424 - -
Lal23g1201 424 PANTHER PROTEIN FIZZY-RELATED 1 17 364 - -
Lal23g1201 424 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 361 424 IPR033010 GO:0010997|GO:0097027|GO:1904668
Lal23g1201 424 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 17 364 IPR033010 GO:0010997|GO:0097027|GO:1904668
Lal23g1201 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Lal23g1201 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 312 IPR001680 GO:0005515
Lal23g1201 424 ProSitePatterns Trp-Asp (WD) repeats signature. 386 400 IPR019775 -
Lal23g1201 424 SUPERFAMILY WD40 repeat-like 122 401 IPR036322 GO:0005515
Lal23g1201 424 Pfam Anaphase-promoting complex subunit 4 WD40 domain 192 244 IPR024977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1201 Lal-Chr23 13325350 13330119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1201 195 402 Miscellaneous Gene Families AT5G08390 27.619 6.61e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1201 K03364 - gmx:100780928 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1201 23 13325350 13330119 Lal23g1201 23 13325350 13330119 ECH
Lal15g1368 15 15816785 15822924 Lal23g1201 23 13325350 13330119 PCT