Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1368 ATGGAAGATTCAACGATTATTCCTTCTCCTTCTCCATCAACACCATCACCGTTCACATCATCACATTCTCGCCACGTCGACCGTTTGATCAATTCAAATCACTACACTTCACCTTCTAGAACAATCTACTCCGATAGGTTTATTCCGACCAGATCTGCTTCTAATTTCGCTCTCTTTGATATTCATTCTTCGCCGGAGACTCGAGAAGATGCTTCCACCGCTTATTCTGCGCTCCTCCGCACCGCTTTGTTCGGACCTGATGCCGCCGGTGGACTCTCGCCGGATAAGAGGAATTCGCTGGCCATGGCGATTCCTAGTCGGAACATTTTCCGGTATAAGACTGAGACTCGCCGTTCCATGCACTCGCTTGAACCTTTCATGTCCGATGACACCGTTCCCGGCGTGAATTATAGTCCGGTTAAAGCTCCGAGGAAAGTTTCTCGATCTCCTTATAAGGTTCTGGATGCACCTGCATTGCAAGACGATTTTTATTTGAATCTTGTGGATTGGTCTTCGCACAATGTGTTGGCTGTTGGTCTTGGTAACTGTGTTTATTTGTGGAATGCTTGTAGTAGCAAGGTGACTAAATTATGTGACTTGGGGATTGATGATTGCGTTTGTTCAGTTGGCTGGGCTCAACGTGGTACGCACCTTGCTGTTGGAACTAGCAATGGTAAAGTTCAGATTTGGGATGCATCTCGATGCAAGAAGATAAGAACTATGGAGGGTCATCGTTTACGTGTTGGGGCCTTGTCCTGGAGTTCATCTCTTTTGTCTTCTGGAGGACGGGATAAGAATATTTATCAACGAGATATACGTGCACAGGAAGATTTTGTTAGTAAATTGTCAGGGCACAAATCAGAGGTTTGTGGACTCAAGTGGTCATATGATAACCGTGAGTTAGCATCTGGAGGAAATGACAACAGGTTGTTTGTTTGGAATCAACACTCAGCCCAGCCTGTCTTGAAGTACTGTGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATCTCCATGGACTTCTTGCGTCTGGGGGAGGAACTGCTGACCGATGTATTCGTTTCTGGAATACAACCACAAACTCGCACTTAAGCTGTATGGACACTGGAAGTCAGGTTTGCAATCTTGTCTGGTCTAAAAATGTCAATGAATTGGTAAGCACTCATGGATACTCCCAGAACCAAATAATTGTTTGGAGATACCCCACCATGTCAAAGTTAGCCACTCTGACAGGCCATACCTATAGAGTTCTCTATCTTGCCATTTCTCCGGACGGACAGACTATTGTAACTGGAGCTGGAGATGAAACACTCAGGTTTTGGAATGTATTCCCTTCCCCTAAATCACAGGAAGTTATAGTTGAAGCTCAAGTGCAAGGACCAGTTGAAGTTGAAACTCAAGTGCAAGGACCAGTTGAAGTTGAAACTCAG 1437 0.4523 MEDSTIIPSPSPSTPSPFTSSHSRHVDRLINSNHYTSPSRTIYSDRFIPTRSASNFALFDIHSSPETREDASTAYSALLRTALFGPDAAGGLSPDKRNSLAMAIPSRNIFRYKTETRRSMHSLEPFMSDDTVPGVNYSPVKAPRKVSRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDCVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKKIRTMEGHRLRVGALSWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSAQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQEVIVEAQVQGPVEVETQVQGPVEVETQ 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1368 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 314 - -
Lal15g1368 479 Pfam WD domain, G-beta repeat 279 314 IPR001680 GO:0005515
Lal15g1368 479 Pfam WD domain, G-beta repeat 408 444 IPR001680 GO:0005515
Lal15g1368 479 Pfam WD domain, G-beta repeat 319 359 IPR001680 GO:0005515
Lal15g1368 479 PANTHER PROTEIN FIZZY-RELATED 1 11 453 - -
Lal15g1368 479 SMART WD40_4 405 444 IPR001680 GO:0005515
Lal15g1368 479 SMART WD40_4 317 359 IPR001680 GO:0005515
Lal15g1368 479 SMART WD40_4 275 314 IPR001680 GO:0005515
Lal15g1368 479 SMART WD40_4 191 231 IPR001680 GO:0005515
Lal15g1368 479 SMART WD40_4 147 188 IPR001680 GO:0005515
Lal15g1368 479 SMART WD40_4 234 271 IPR001680 GO:0005515
Lal15g1368 479 Pfam Anaphase-promoting complex subunit 4 WD40 domain 201 255 IPR024977 -
Lal15g1368 479 MobiDBLite consensus disorder prediction 1 23 - -
Lal15g1368 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 412 445 - -
Lal15g1368 479 ProSitePatterns Trp-Asp (WD) repeats signature. 431 445 IPR019775 -
Lal15g1368 479 Gene3D - 140 449 IPR015943 GO:0005515
Lal15g1368 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 323 IPR001680 GO:0005515
Lal15g1368 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 240 IPR001680 GO:0005515
Lal15g1368 479 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 11 453 IPR033010 GO:0010997|GO:0097027|GO:1904668
Lal15g1368 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 412 445 IPR001680 GO:0005515
Lal15g1368 479 SUPERFAMILY WD40 repeat-like 160 455 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1368 Lal-Chr15 15816785 15822924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1368 218 447 Miscellaneous Gene Families AT5G08390 21.030 4.63e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1368 K03364 - gmx:100780928 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1368 15 15816785 15822924 Lal15g1368 15 15816785 15822924 ECH
Lal15g1368 15 15816785 15822924 Lal23g1201 23 13325350 13330119 PCT