Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1169 ATGCAACACTTCAAATCCTTAGGTAGAGAATTCTCCATTGGATCACAATCCAAAGAACTATTCCACAATCATTCCAAAGATTTTATTGATCTCATCAAATCCATCGGCGATTCCAAATCCAAATCCGAAGAAGATCGAATCGTCTTCAACCAAATCCAAACCCTCAAAATTCAACTCACCGAACCTAACATCTCCAACCGCAACATCAAAGAATGCATTATCAGACTCCTCTACATCGAAATGCTCGGCCACGACGCTTCCTTCGGTTACATTCACGCCGTTAACATCACTCACCACGATGACCTCAAACTCAAACGCACCGGTTATCTCGCCGTTACTTTATTCCTTCACGAAAATCATGACCTCATTATCCTCATCGTTAATACTATCCAGAAGGATCTTAAATCCGATAACTACCTTGTCGTTTGCGCCGCGCTGAACGCCGTTTGCAGGCTCATTAACGAGGACACCATCCCCGCGGTGTTGCCTCAGGTGGTGAAGCTCTTAGGTCATTCTAAAGAGGCGGTTAGGAAGAAGGCCGTTATGGCGCTTCATCGGTTTTTTCAGACATCGCCGTCATCTGTGTCGCATTTGGTGGCGAATTTTCGAAAGAGGTTGTGTGATAATGATCCCGGGGTAATGGGTGCTGCTTTGTGTCCACTTTTTGATCTTGTGACTATTGATGCTGACTCTTATAAGGACCTTGTTGTTACCTTTGTTAACATTCTTAAACAAGTTGTTGAACGTAGGTTGCCTAAGAACTATGATTATCATCAAATGCCAGCTCCATTCATTCAGGTTAAGTTGCTGAAAATCTTGGCGTTGTTGGGTAGTGGTGACAAGAAAGCTAGTGAAAACATGTATACTGTTCTTGGTGATATAATCAGGAAGAGTGATTCATCAACTAATATAGGGAATGCTGTTCTTTACGAGTGCATACGCTGTGTCTCTTCCATATATCCCAATCCTATGTTATTAGAAGCTGCGGCAGATGTTATTGCAAAATTTTTGAAGAGTGACAGTCATAATCTCAAGTACATGGGCATTGATGCCCTTGGTCGTCTGATAAAGTTAAGTCTAAATATTGCTGAACAACATCAACTGGCTGTGATTGACTGCTTAGAGGACCCTGATGATACTATGAAGAGAAAAACATTTGAACTTCTATATAAAATGACCAAGTCCTCCAACGTGGAAGTGATTGTTGACCGCATGATTGATTACATGACTAGCATTAATGATGATCATTATAAAGCCTATATAGCATCTCGGTGTGTTGAACTTTCTGAGCAATTTGCACCGAGTAATCATTGGTTTATACAGACCATTAATAAAGTGTTTGAGCATGCTGGAGATGTTGTGAATATTAAGGTGGCACATAATTTGATGCGATTGATCGCTGAAGGATTTGGAGAGGATGATGACGCTAAATATAGTCAGTTGAGATCATCTGCTGTTGAATCATATTTGCGCATTATTGGAGAACCAAAGCTTCCATCTGTGTTTCTTCAAGTCATATGTTGGGTTCTGGGGGAATATGGCACAGCTGACGGAAAGTATTCTGCTTCATATATGAGTGGGAAGTTGTGCGACATTGCCGAGGCATATTCTAATGATGAAACTGTTAAGGCATATGCTATTTCAGCATTGATGAAAATTTATGCATTTGAAGTAGCAGCTGGGAGGAAAGTGGATATGCTACCTGAGTGTCAATCTTTGATTGAAGAATTATTAGCATCCCACTCTACAGATTTGCAGCAGCGTGCTTATGAATTGCAAGCCCTTATTGGTTTGGATGCACAAATCGTTGAAACAATAATGCCACGAGATGAAAGTTGTGAAGACATTGAGGTTGATAAGGACCTCTCTTTCCTCAATGGTTATGTCCAGCAATCTCTAGAAAAAGGTGCTCAACCTTACATTCCTGAGGATGTGCGCACTGGATTGGGGAATATGAGCAGCTTCAGAAGCCAAGATCATCAAGAACCTTTGCAGCACGGACTGCGATTTGAAGCATATGAACTTCCAAAGCCTCCAATGCAATCGAAGGTTGCTCCAGTTTCATTTGCATTCTCAACAGGCATTGCTTCAGTACCTGAGGCATTGTATTCAAGGGAAACCCACCATGCCTCATCAATGGGATCAGCATCAGAAGCTGTATCATCAGAGCTTAAGCTACGGCTTGATGGTGTTCAGAAGAAGTGGGGTAAACCAACTTATACGTTTTCAACCTCATATTCTACTTCCCACACACCAACAAATGGAGCAGCTCAGGTGGATGATCCAACAGCTGTCAACTTGAAAGTACGTGATAGTTATGATTCAAGAAAGGCACATGTTGAAATTTCTATGGAAAAGCAGAAGCTTGCTGCTTCATTATTTGGTGGTTCTACCAAACCTGAGAAAAGATCATCCACTAGTCATAAGGTTCCGAAAGCTAGTGCTAGTGTTGCAGACAGATCCCAGGGATCAAAGGCTGCAGGTGTACCCAATGAAGTAGTCATGGAGAGAAAAATTCATCACCCTCCTCCAGACTTGCTTGACTTGGGTGAACCAACTGTCACTACTGGTCCTCCCTCTGTGGACCCTTTCCAGCAATTTGAAGAACTTCTTGACCCAAGCATTAGTTCCACAACAAATCATAATGCAGGTGCTGCTACAAACGCGCTTGACTTTATGACACACTATGCAGAGACTACTGCAATTGGGCGTAGTGGCAGTGGTGGCTATTCTATCCCAGTGACGGGGGATAATTTAAATCTTTTATATGAGTTATCGGATGCAGCTATTGGAGTTACTAGTGCAGAAACAATTGTGACACCTCTGCCACAATCTGTGAAGTTTTCAAATGCTAAAGATTCTTTGCAGAAGGATGCATTTGTGAGGCAGATGGGTGTGAACCCTTCAAGTCAGAATCCGAACTTGTTCAGGGACTTGCTTGGCTAA 2946 0.4219 MQHFKSLGREFSIGSQSKELFHNHSKDFIDLIKSIGDSKSKSEEDRIVFNQIQTLKIQLTEPNISNRNIKECIIRLLYIEMLGHDASFGYIHAVNITHHDDLKLKRTGYLAVTLFLHENHDLIILIVNTIQKDLKSDNYLVVCAALNAVCRLINEDTIPAVLPQVVKLLGHSKEAVRKKAVMALHRFFQTSPSSVSHLVANFRKRLCDNDPGVMGAALCPLFDLVTIDADSYKDLVVTFVNILKQVVERRLPKNYDYHQMPAPFIQVKLLKILALLGSGDKKASENMYTVLGDIIRKSDSSTNIGNAVLYECIRCVSSIYPNPMLLEAAADVIAKFLKSDSHNLKYMGIDALGRLIKLSLNIAEQHQLAVIDCLEDPDDTMKRKTFELLYKMTKSSNVEVIVDRMIDYMTSINDDHYKAYIASRCVELSEQFAPSNHWFIQTINKVFEHAGDVVNIKVAHNLMRLIAEGFGEDDDAKYSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKYSASYMSGKLCDIAEAYSNDETVKAYAISALMKIYAFEVAAGRKVDMLPECQSLIEELLASHSTDLQQRAYELQALIGLDAQIVETIMPRDESCEDIEVDKDLSFLNGYVQQSLEKGAQPYIPEDVRTGLGNMSSFRSQDHQEPLQHGLRFEAYELPKPPMQSKVAPVSFAFSTGIASVPEALYSRETHHASSMGSASEAVSSELKLRLDGVQKKWGKPTYTFSTSYSTSHTPTNGAAQVDDPTAVNLKVRDSYDSRKAHVEISMEKQKLAASLFGGSTKPEKRSSTSHKVPKASASVADRSQGSKAAGVPNEVVMERKIHHPPPDLLDLGEPTVTTGPPSVDPFQQFEELLDPSISSTTNHNAGAATNALDFMTHYAETTAIGRSGSGGYSIPVTGDNLNLLYELSDAAIGVTSAETIVTPLPQSVKFSNAKDSLQKDAFVRQMGVNPSSQNPNLFRDLLG 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1169 981 Gene3D - 12 609 IPR011989 -
Lal23g1169 981 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 21 977 - -
Lal23g1169 981 PIRSF AP4_epsilon 933 981 IPR017109 GO:0015031|GO:0030124
Lal23g1169 981 PIRSF AP4_epsilon 14 838 IPR017109 GO:0015031|GO:0030124
Lal23g1169 981 SUPERFAMILY ARM repeat 41 640 IPR016024 -
Lal23g1169 981 MobiDBLite consensus disorder prediction 795 827 - -
Lal23g1169 981 Pfam Adaptin N terminal region 55 597 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lal23g1169 981 PANTHER AP-4 COMPLEX SUBUNIT EPSILON-1 21 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1169 Lal-Chr23 13077954 13085464 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1169 K12400 - gmx:100819573 1526.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1169 23 13077954 13085464 Lal23g1169 23 13077954 13085464 ECH
Lal16g0389 16 2349191 2355681 Lal23g1169 23 13077954 13085464 LSH