LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal16g0389	ATGGAGCAGTTAAAATCCATCGGTAGAGAACTCGCCATGGGAACACAATCGAAAGAACTATTCCACAACCATTCCAAAGAATTCTTAGATCTCATCAAATCCATCGGTGAATCTCGATCTAAATCCGAAGAAGATCGCATCGTCCTCCAACAAATCCAAACCCTAAAAATTCAACTCACTGAACCAAACATCCCTACTCGCAAGATCAAAGAATACATCATTCGCCTCCTCTACATCGAGATGCTTGGCCACGACGCTTCTTTCGGTTACATCCACGCCGTTAATATCACTCACCACGACTCTCTCTTACTCAAACGCACCGGTTACCTCGCCGTTACTCTTTTCCTCCATGATAACCACGATCTCATCATTCTCATCGTTAACACTATCCAGAAAGATCTCAAATCCGATAACTACCTCGTCGTTTGCGCTGCTCTCAATGCCGTTTGCAGGCTTATCAACGAGGATACGATTCCAGCGGTGTTGCCACAGGTGGTGGAGCTTTTAGGTCATTCTAAAGAGCTAGTTAGGAAGAAGGCGGTTATGGCGCTTCATCGCTTTTACCAGAAATCGCCGTCTTTTGTTTCGCATTTGGTGCCGAATTTTCGGAAGAGGCTGTGTGATAATGATCCTGGGGTAATGGGTGCTGCTCTTTGCCCACTTTTTGATCTTGTCACTATTGATGTTGATTCTTATAAGGATCTCGTTGTTAGCTTTGTTAACATTCTTAAGCAAGTGGCAGAACGCAGGTTGCCTAAGAACTATGATTATCATCAGATGCCAGCTCCATTCATTCAGGTTAAGTTGCTGAAAATCTTGGCGTTGTTGGGTAGTGGTGACAAGAAAGCTAGTGAGAACATGTATACTGTTCTTGGTGATATAATCAGGAAGAGTGATTCATCGACTAATATAGGGAATGCTGTTCTTTACGAGTGCATATGCTGTGTCTCTTCAATATATCCCAATCCTAAGTTATTAGAAGCTGCCGCAGATGTTATTGCGAAATTTTTGAAGAGTGACAGTCACAATCTCAAGTATATGGGCATTGATGCCCTTGGTCGGCTGATAAAGTTAAGTCCAAATATTGCGGAACAACACCAACTGGCTGTGATTGACTGCTTAGAGGACCCTGATGATACTATGAAGCGAAAAACTTTTGAACTGCTAGACAAAATGACCAACTCCTCCAATGTGGAAGTGATTGTTGACCGCATGATTGATTACATGATTAGCATTAGTGATGACCATTATAAAGCTTATATAGCGTCCCGCTGTGTGGAACTTGCTGAGCAGTTTTCTCCGAGCAATCATTGGTTTATACAGACCATTAATAAAGTTTTTGAGCATGCTGGAGATCTTGTGAATATTAAGGTGGCACATAATTTGATGCGGTTGATTGCTGAGGGATTTGGAGAGGGCGATGATGCTGCATATAGTCAATTGAGATCATCTGCTGTTGAATCATATTTGCGCATTATTGGAGAGCCAAAGCTTCCATCTGTGTTTCTTCAAGTAATCTGTTGGGTTCTGGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCTTATATCAGTGGGAAGTTAAGTGACATTGCAGAGGCATACTCTAATAATGAAACTGTTAAGGCATGCACTATTTCAGCATTGATGAAAATTTATGCATTTGAAGTAGCAGTTGGGAGGAAAGTGGATATGCTACCCGAGTGTCAATCTTTGATTGAAGAATTATTAGCATCCCACTCTACAGATTTGCAGCAGCGTGCTTATGAATTGCAAGCCCTTGTTGGATTGGATGCACAAGTTGTAGAAACAATAATGCCACATGATGCAAGTTGTGAAGACATTGAGTATTTCATATTCCTAAGTTTTGACAACAAAAAGAAATTCACAGAAGGAAGGGAAGAGGGAGAAGGGAAGGGTCAGAAGGGAAGGGGGAGGTTCTTCATGCTGGAACGGGTTCTGGACCACGCCTCTGCTGCTAATCAACCCGTGATAAGCACGACGGCCTACCGCACCGCTATTCGCCATTCCATCGCGAGGAAGGACGGCAACGTTGATAAGGACCTTTCTTTCCTCAATGGTTATGTCCAGCAATCTCTCGAAACGGGTGCTCAGCCTTACATCCCTGAGGATGTGCGAACTGGAATGGGGAATATGAGCAGTTTCGGAAGCCAAGATCAGCATGAACCATTGCAGCATGGTCTGAGATTTGAAGCATATGAACTTCCAAAGCCTCCAATGCAATCAAAGGTTACTCCAGTTTCATTTGCATCCTCAACAGACATTGTTTCAGTAGCTGAGGCATTGTATTCGAGGGAAACCCAACACGTATCATCAGTGGGATCAGCAGCATCAGAAGCTGGATCATCAGAACTTAAGCTACGGCTTGATGGTGTTCAGAAGAAGTGGGGTATGCCAGCTTATTCGTCTTCAACACCATCTACCTCATTTTCTACTTCCCAAAAACCAGCAAATGGGGTGACTCAGGTGGATGGTGCAACAGCTATCAATTTGAAATCACCTGATAGTTATGATTCAAGAAAGACACATGTTGAAATTTCTCCAGAAAAGCAGAAGCTTGCTGCTTCATTGTTTGGTGGTTCTACTAAACCTGAGAAAAGATCATCCACAAGTCATAAGCTTCCTAAAGGTAGTGTTAGTGCTGCCGACAGATCTCAAGGACCAAAGGCGGCAGGTGTACCCAATGAAGTTGTAGTGGAGGAAAAAATTCATAGACCTCCTCCAGATTTGCTCGACTTGGGTGAACCAACTGTCACTAGTGGTCCTCCCTCTGTGGACCCTTTCATGCAATTGGAAGGACTTCTTGACCCAAGCACTAGTTCGAAAACAAACCACAACGCAGTTGCTGCTACAAGTGCGCCTGATATTATGACACTCTATTCAGACACTACTGCAAGTGGGCATAGTGGCAGCGGTGCCTATTCTGTCCCCCTAAGTGGGGATAATTTAAATCTTCTATCTGAGTTATTCAATGCTTCTGTTGTAGTTAATAGTGCAGAAACAATTGTGACACCTTTGCCACAATCTATGAAGGGTTCAAATGCTAAAGATTCTTTGCAGAAGGATGCATTAGTGAGGCAGATGGGTGTGAACCCTTCAAGTCAGAATCCCAACTTATTCAGCGACTTGCTTAGCTAA	3162	0.4336	MEQLKSIGRELAMGTQSKELFHNHSKEFLDLIKSIGESRSKSEEDRIVLQQIQTLKIQLTEPNIPTRKIKEYIIRLLYIEMLGHDASFGYIHAVNITHHDSLLLKRTGYLAVTLFLHDNHDLIILIVNTIQKDLKSDNYLVVCAALNAVCRLINEDTIPAVLPQVVELLGHSKELVRKKAVMALHRFYQKSPSFVSHLVPNFRKRLCDNDPGVMGAALCPLFDLVTIDVDSYKDLVVSFVNILKQVAERRLPKNYDYHQMPAPFIQVKLLKILALLGSGDKKASENMYTVLGDIIRKSDSSTNIGNAVLYECICCVSSIYPNPKLLEAAADVIAKFLKSDSHNLKYMGIDALGRLIKLSPNIAEQHQLAVIDCLEDPDDTMKRKTFELLDKMTNSSNVEVIVDRMIDYMISISDDHYKAYIASRCVELAEQFSPSNHWFIQTINKVFEHAGDLVNIKVAHNLMRLIAEGFGEGDDAAYSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKYSASYISGKLSDIAEAYSNNETVKACTISALMKIYAFEVAVGRKVDMLPECQSLIEELLASHSTDLQQRAYELQALVGLDAQVVETIMPHDASCEDIEYFIFLSFDNKKKFTEGREEGEGKGQKGRGRFFMLERVLDHASAANQPVISTTAYRTAIRHSIARKDGNVDKDLSFLNGYVQQSLETGAQPYIPEDVRTGMGNMSSFGSQDQHEPLQHGLRFEAYELPKPPMQSKVTPVSFASSTDIVSVAEALYSRETQHVSSVGSAASEAGSSELKLRLDGVQKKWGMPAYSSSTPSTSFSTSQKPANGVTQVDGATAINLKSPDSYDSRKTHVEISPEKQKLAASLFGGSTKPEKRSSTSHKLPKGSVSAADRSQGPKAAGVPNEVVVEEKIHRPPPDLLDLGEPTVTSGPPSVDPFMQLEGLLDPSTSSKTNHNAVAATSAPDIMTLYSDTTASGHSGSGAYSVPLSGDNLNLLSELFNASVVVNSAETIVTPLPQSMKGSNAKDSLQKDALVRQMGVNPSSQNPNLFSDLLS	1053

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal16g0389	1053	MobiDBLite	consensus disorder prediction	806	843	-	-
	Lal16g0389	1053	PANTHER	AP-4 COMPLEX SUBUNIT EPSILON-1	21	624	-	-
	Lal16g0389	1053	PANTHER	AP-4 COMPLEX SUBUNIT EPSILON-1	681	1049	-	-
	Lal16g0389	1053	MobiDBLite	consensus disorder prediction	806	901	-	-
	Lal16g0389	1053	PANTHER	ADAPTIN, ALPHA/GAMMA/EPSILON	21	624	-	-
	Lal16g0389	1053	PANTHER	ADAPTIN, ALPHA/GAMMA/EPSILON	681	1049	-	-
	Lal16g0389	1053	PIRSF	AP4_epsilon	947	1053	IPR017109	GO:0015031\|GO:0030124
	Lal16g0389	1053	PIRSF	AP4_epsilon	726	894	IPR017109	GO:0015031\|GO:0030124
	Lal16g0389	1053	PIRSF	AP4_epsilon	11	634	IPR017109	GO:0015031\|GO:0030124
	Lal16g0389	1053	PIRSF	AP4_epsilon	666	780	IPR017109	GO:0015031\|GO:0030124
	Lal16g0389	1053	Gene3D	-	12	609	IPR011989	-
	Lal16g0389	1053	SUPERFAMILY	ARM repeat	41	608	IPR016024	-
	Lal16g0389	1053	Pfam	Adaptin N terminal region	48	596	IPR002553	GO:0006886\|GO:0016192\|GO:0030117

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal16g0389	Lal-Chr16	2349191	2355681	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal16g0389	K12400		-	vvi:100249377	1226.46

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal16g0389	16	2349191	2355681	Lal16g0389	16	2349191	2355681	ECH
	Lal16g0389	16	2349191	2355681	Lal23g1169	23	13077954	13085464	LSH