Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1125 ATGTCGACAAAAACAGTTAAAGTCAGCAACGTTTCCCTGGGAGCAACTGAGCGAGACATTCAGGAGTTCTTTTCTTTTTCTGGTGATATTCAATATGTTGAACTGAAAAGTCATGATGAGAAGTCTCAAATTGCCTATGTTACATTCAAGGATTCACAGGGAGCTGAGACTGCAGTACTGTTATCGGGAGCAACAATTGTTGATCTGTCCGTTACAATAACTCCGGATCCAGATTACCAGCTTCCACCTGCTGCCTTGGCATTATCTGTGAGCATTGAAAAAGGAAGTAATACTCCGGCTGGTTCTGAAACTGCTTTGCAGAAGGCAGAGGATGTGGTCACAAGCATGCTGGCCAAGGGCTTTATCTTAGGAAAAGATGCTGTCAACAAAGCAAAGACATTTGATGAGAAGCTCCAGTTGACCTCAACAGCCTCAGCAAAAGCTGCAGCAATTGACCAGAAAATCGGTCTTAGTGATAAATTAAATGCTGGTGCTTCAGTTGTGAGTGATAAAGTCCGAGAAGTCGATCAAAAGTTTCAAGTTTCAGAAAAGACCAAATCAGCATTTGCAGCTGCTGAACAGAAAGTCAGTACTGCTGGTTCTGCTATAATGAGTAATCGTTATATACTCACTGGGGCCTCCTGGGTAACAGGTGCTTTTAACAAGGTTTCTAAGGCTGCAGGGGAAGTAGGACAAAAGACAAAAGAGAAGGTGGAGAACGAAGAAGAGCAACAGAAGCGCAAAGTGGAAGAGCAACAGAGGCGTAAAGCGGAAGATGAGTATGCACATGTCCTTACCGAGTCCCCAAAAGCAGGAGCAACAAGTGAGAAGGAGTCTTCCAAGCCTGCTCCTGCTCAGGGTTTGATCCTTTGA 873 0.4433 MSTKTVKVSNVSLGATERDIQEFFSFSGDIQYVELKSHDEKSQIAYVTFKDSQGAETAVLLSGATIVDLSVTITPDPDYQLPPAALALSVSIEKGSNTPAGSETALQKAEDVVTSMLAKGFILGKDAVNKAKTFDEKLQLTSTASAKAAAIDQKIGLSDKLNAGASVVSDKVREVDQKFQVSEKTKSAFAAAEQKVSTAGSAIMSNRYILTGASWVTGAFNKVSKAAGEVGQKTKEKVENEEEQQKRKVEEQQRRKAEDEYAHVLTESPKAGATSEKESSKPAPAQGLIL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1125 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 76 IPR000504 GO:0003723
Lal23g1125 290 Gene3D - 1 74 IPR012677 -
Lal23g1125 290 SUPERFAMILY RNA-binding domain, RBD 3 76 IPR035979 GO:0003676
Lal23g1125 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 66 IPR000504 GO:0003723
Lal23g1125 290 PANTHER BINDING PARTNER OF ACD11 1 1 256 - -
Lal23g1125 290 MobiDBLite consensus disorder prediction 229 290 - -
Lal23g1125 290 CDD RRM_Vip1_like 6 74 IPR034360 -
Lal23g1125 290 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 256 - -
Lal23g1125 290 Coils Coil 233 267 - -
Lal23g1125 290 MobiDBLite consensus disorder prediction 229 265 - -
Lal23g1125 290 SMART rrm1_1 5 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1125 Lal-Chr23 12791373 12794193 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1125 - - lang:109331307 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1125 23 12791373 12794193 Lal23g1125 23 12791373 12794193 ECH
Lal16g0444 16 2736869 2740011 Lal23g1125 23 12791373 12794193 LSH