Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0444 ATGTCGATAAAAACTGTTAAAGTCGGTAACGTTTCCTTGGGAGCAACTGAACGAGACATTCAGGAGTTCTTTTCATTTTCTGGTGATATTGAATATGTCGAACTGAAAAGTCATGATGAAAAGTCTCAAATTGCCTATATTACCTTCAAGGATTCACAGGGAGCTGAGACTGCAGTACTGTTATCGGGAGCAACAATAGTTGATATGTCAGTCACAATAACTCCGGATCCAGATTACCAGCTTCCACCTGCTGCCTTGACATCGTCTGCAAAAGAAAGTAAAACTCCTTCTGGTTCTGAAAGTGCTTTGCAGAAGGCAGAGGATGTGGTCACAAGCATGCTAGCCAAGGGCTTTATCTTAGGAAAAGATGCTGTCAACAAAGCAAAGACTTTCGATGAGAAGCACCAGTTGACCTCAACAGCCACAGCAAAAGTTGCATCACTTGACCAGAAAATCGGGCTCAGTGATAAACTAACTGTTGGTGCTTCGGTTGTGAGTGATAAAGTTCGAGAAGTCGATCAAAAGTTTCAAGTTTCAGAGAAAACCAAATCAGCATTTGCAGCCGCTGAGCAGAAAGTCAGTACTGCTGGTTCTGCTATAATGAAGAATCGCTATGTGCTCACTGGGACCTCCTGGGTTACAGGTGCCTTTAACAAGGTTTCTAAGGCTGCCGGGGAAGTAGGTCAGAAGACAAAAGAGAAGGTGGAGAACGAAGAAGAGCAACAGAAGCGAAACGTGGAAGATCAGTATGCACAGGTCCTTTCTGAGTCCCCAAAAGCAGCAGCCACGAGTGAGCAGCAGTCTTCCAAGCCTGCTCCTGCTCAGGGTTTGATCCTTTGA 840 0.4488 MSIKTVKVGNVSLGATERDIQEFFSFSGDIEYVELKSHDEKSQIAYITFKDSQGAETAVLLSGATIVDMSVTITPDPDYQLPPAALTSSAKESKTPSGSESALQKAEDVVTSMLAKGFILGKDAVNKAKTFDEKHQLTSTATAKVASLDQKIGLSDKLTVGASVVSDKVREVDQKFQVSEKTKSAFAAAEQKVSTAGSAIMKNRYVLTGTSWVTGAFNKVSKAAGEVGQKTKEKVENEEEQQKRNVEDQYAQVLSESPKAAATSEQQSSKPAPAQGLIL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0444 279 SMART rrm1_1 5 74 IPR000504 GO:0003723
Lal16g0444 279 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 265 - -
Lal16g0444 279 SUPERFAMILY RNA-binding domain, RBD 3 76 IPR035979 GO:0003676
Lal16g0444 279 Coils Coil 232 256 - -
Lal16g0444 279 MobiDBLite consensus disorder prediction 226 279 - -
Lal16g0444 279 Gene3D - 2 74 IPR012677 -
Lal16g0444 279 PANTHER BINDING PARTNER OF ACD11 1 1 265 - -
Lal16g0444 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Lal16g0444 279 MobiDBLite consensus disorder prediction 82 102 - -
Lal16g0444 279 MobiDBLite consensus disorder prediction 86 102 - -
Lal16g0444 279 MobiDBLite consensus disorder prediction 247 273 - -
Lal16g0444 279 MobiDBLite consensus disorder prediction 226 246 - -
Lal16g0444 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 66 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0444 Lal-Chr16 2736869 2740011 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0444 - - lang:109331307 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0444 16 2736869 2740011 Lal16g0444 16 2736869 2740011 ECH
Lal16g0444 16 2736869 2740011 Lal23g1125 23 12791373 12794193 LSH