Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1118 ATGGACAATGATGCACCACGAGATTTTTCATCTACCTTTCAAAGATACCAGCAGGAAGATGCACACGAATTTATGCAGTATGCCCTGGATAAATTAGATAGGTGCTTTCTTTATTTGAAGGAAAATAATAAGAGTTTTGAAGATGTTAATCTAGTAGAGAAAATTTTTGGAGGTCGTCTCATAAGCAAACTTTGCTGCTCTAACTGTGGCCACTCGTCTAATACTTATGAGCCACTAATTGACATGAGTTTAGAGATAGAAAATGTGGACACTCTTGCAAGTGCTCTGGAATCCTTCACCAAGTTGGAATATATTGAATCAAATTTCAAATGTGATGGATGCAAGGGAGAAGTTTCCTTGGAAAAGCAGCTTTTGTTAGATCAGGCACCATTGGTTGCTGCATTACATTTGAAAAGATTTAAAACTGATGGAACTTTTGTTGAAAAGCTTGACAAGCATGTGGATTTTCCGTTGGAGTTGGATTTGCAGCTGTGCTCTGTTTCTGATAAAAACAGCAATGAACCAATGAAGTATGATCTGTATGCAGTTGTTGTGCATGCAGGAATATCAGCAACTTCAGGACATTACTTCTGCTATGTCCGCTCAGCCCCAGATATATGGAATAAATTGGATGATTCACAGGTTACTAGGGTCTCAACAGACTCTGTGCTATCTCAGGAAGCATATATATTGTTTTATGCACAACAGGGTACACCTTGGTTTTCAAGTATCATGGAATTGCCAATGCCGTGCTTGGATCGAAGTATTTGGAATACTTCTCCTAAGTCTGTTTTAGGCCAGGTTGACAGCTCAGATGAATCAAGTCCTCTTATAACTGAAAATATTGTAAGTGATGAGGCTAGTGAATCCAAAGAATCTTCTGAGGAGCAGCTTGATTATTTTTGTAAAGTAAGGCTTGAGTTACCTAAGGTCAATGATACTATTGATGCTTCTCATGGCTGCAAACAATTTCTTTCTAAGCCCAAGCAGGAAAGTGTTGGTTTGAATTCCGTAAAAGATACCATCCAAGTCCAAGTGCCACTTGAGAAAGGTGCCATGTTGATTGTAAGTGCTTTGGTCAATGGAGATTCACATGTTGAGAGTGGCAGTCCTGATAAAAACAAATGCTCTCAAGAAAGTGTTGATTTTGGAAAGAATAATGATGGTTTCAATCATTTAACTTCTTCCATCTCCCCTTCCCATGTTTCCCCAGACAGGAGTTACCACATTGATCGAGATCATTTGAAGAAGAGTAGCAGGGGTGGTAAAAAAACAAGAAGCAAGCATGTGAGAGATGAGGGAAATTCTGAGAGAAAAGTAGCTTTGAGATATGCTAGCAAGATGCATGGTTCAAGAAGAGATGCAATTTTGGCGTTAGTTGGTTGCAATGGGAAAGAATTGAACAAGAAGAGAAAAGTGATAGATTCATCACTGTGCAATGAAGACAGTCATCAAGGTGTTCCCAAAAAAACAAACCATGCTTCTATCATGCTACCTGTGGCAGCTGGAAGTTCACAGTGA 1521 0.3918 MDNDAPRDFSSTFQRYQQEDAHEFMQYALDKLDRCFLYLKENNKSFEDVNLVEKIFGGRLISKLCCSNCGHSSNTYEPLIDMSLEIENVDTLASALESFTKLEYIESNFKCDGCKGEVSLEKQLLLDQAPLVAALHLKRFKTDGTFVEKLDKHVDFPLELDLQLCSVSDKNSNEPMKYDLYAVVVHAGISATSGHYFCYVRSAPDIWNKLDDSQVTRVSTDSVLSQEAYILFYAQQGTPWFSSIMELPMPCLDRSIWNTSPKSVLGQVDSSDESSPLITENIVSDEASESKESSEEQLDYFCKVRLELPKVNDTIDASHGCKQFLSKPKQESVGLNSVKDTIQVQVPLEKGAMLIVSALVNGDSHVESGSPDKNKCSQESVDFGKNNDGFNHLTSSISPSHVSPDRSYHIDRDHLKKSSRGGKKTRSKHVRDEGNSERKVALRYASKMHGSRRDAILALVGCNGKELNKKRKVIDSSLCNEDSHQGVPKKTNHASIMLPVAAGSSQ 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1118 506 MobiDBLite consensus disorder prediction 364 438 - -
Lal23g1118 506 Pfam Ubiquitin carboxyl-terminal hydrolase 9 233 IPR001394 GO:0004843|GO:0016579
Lal23g1118 506 Gene3D Cysteine proteinases 3 237 - -
Lal23g1118 506 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 178 196 IPR018200 GO:0004843|GO:0006511
Lal23g1118 506 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8 299 - -
Lal23g1118 506 MobiDBLite consensus disorder prediction 371 403 - -
Lal23g1118 506 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8 299 - -
Lal23g1118 506 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 236 IPR028889 -
Lal23g1118 506 SUPERFAMILY Cysteine proteinases 9 235 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1118 Lal-Chr23 12738076 12742391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1118 17 235 Miscellaneous Gene Families AT4G31670 35.088 4.29e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1118 K11855 - gmx:100808015 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1118 23 12738076 12742391 Lal23g1118 23 12738076 12742391 ECH
Lal16g0466 16 2885801 2891214 Lal23g1118 23 12738076 12742391 LSH