Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0466 ATGTGTAACCCGATTATTGCACCTACCAAATCGAACCCTTCTACTCCTCCTCCTTCGGCGCTAGATTCAGTGTCCAGTGTCGTAAATTCATCTCAGTTGTTCGATTGCATAGAAAGATCCTCTACATTCGATGACGCTCCTATGCCACTTTCAGTGGCGCCACCCTCCGGTGACGTTATTTACCTCTCCAATCCATATAAAGATTCTCAACAACGATATGGGCTTTCTGACCCTGATTTGATTTCGCCATATCAATCTTCTTCCAAGTACAATTTTACTTCTTGGGATTCGTGGCCGATTTCTGATGAGAAACCCCAAGTGTGTGACCCAGAGCCAAGCCATATTGACGATCAAAACTGGTTGTACTCTAGTGATCCCGTTGCACCTTCAAAGAATGAAGAGTTACCCTCTCGTGTGGGAGCTGGGCTTTCAAATCTTGGCAACACATGCTTTATGAATGCTATCTTGCAATGTTTTACACATACCGTTCCCCTAATTGACGGTCTCCGTTCTAGTAGCCATTCCTTCCCTTGTGATTGCTATCACAGTGAGTTTTGTGTCATTTGTTCTATCCGTGCCCAGATAGAATGTTCTTTAGCATCTTCAGGAGGAATGGTTTCACCTTGGAAGCTTGTTAAAAACTTGAGTTATTTTTCATCTAGCTTTAGTAGGTATCAGCAGGAAGATGCACATGAGTTTATGCAGTGTGCCCTGGATAAACTGGATAGGCGCTTCCTTGATTTGAAGGAGAATAGTAAGAGTTTTGAAGGTGTCAATCTAGTAGATAACATTTTTGGAGGTCGTCTCCTAAGCAAACTTCGCTGCTCTAACTGTGGCCACTCATCTAATACCTATGAACCACTAATTGACATGAGCTTAGAGATAGAAAATGTGGACACTCTTCCAAATGCTCTGGAATCCTTCACCAAGTTGGAACAAATTGAATCAAATTTTAAGTGTGATAACTGTAAGGTAGAAGTTACCTTGGAAAAGCAGCTTTTGTTGGATCAGACACCTTCAGTTGCTGCATTTCACTTGAAAAGATTTAAGACTGATGGGAATCTTGTTGAAAAAATTGACAAACAAGTGGATTTTCCGCTGGAGTTAGACCTGAAGCTGTACTCTGTTTCTGATCATAACAGTAATGAATCAATGGAGTATGATCTGTATGCAGTTGTTGTGCATATAGGATTATCAGCTACTTCGGGACATTACTTCTGCTATGTTCGCTCAGCCCCAGATATATGGCATAAATTGGATGATTCAAAGGTTACTAGGGTGTCTGCTGAATCTGTGCTGTCTCAGGAAGCATATATATTGTTTTATGCACGACAGGGCACACCATGGTTTTCAAATATTATGGAATCTCCATTGCCGTGCCTGGATCCAAGTATTTGGGATACCTCTCCTAAGTCTGTTTTAGATAGGGTTGACAGCTCAGATAAATCAACTCCTATTATTACGACAAATATTGTCAGGGATGGGGCTAGTGAATCCAAAGAATCTTCAGAGCCAAACCAGGAAAGTGTTGGTCTAAAGGCTGTAAAAAATATCATCCAAGCTCCAGTTGGGAAAGGTGCCATGTTGAATGTGAGTACCTTGGTTGATGGAGATTTACATGTTGAGTGTGGTGATTCTGATAAAAAGAACAATAATGATGGTTTCAATGATTTAACTCCTCCCAGCTCCCCACCTCATGATTTTCCAGACAGGAGTTACCACATCCCTCGTGATCATTTGAAGAAGAGTAGCGAGAGTGCTAAAAGACCAAAATCAAAATCTAAGTATATAGGAGATACAGAAAATTCAGAGAGAAAAACAGCTGTGAGATATGCTAGCAAGATGCATGGGTCGAGGAGAGACACAATTTTGGCTTTAGTTGAATGCAATGGGAAAGCTTTGAACAAAAGAAAAGAGGTAGATTCATCACTTTGCAAGGAAAACAGCCATCGCCGTGTTCCCAAAAAGCCAAACCATGCTTCTGTCATGCGCCCTGTGGCAGCTGGAGTTCACAATAAATAG 2022 0.4144 MCNPIIAPTKSNPSTPPPSALDSVSSVVNSSQLFDCIERSSTFDDAPMPLSVAPPSGDVIYLSNPYKDSQQRYGLSDPDLISPYQSSSKYNFTSWDSWPISDEKPQVCDPEPSHIDDQNWLYSSDPVAPSKNEELPSRVGAGLSNLGNTCFMNAILQCFTHTVPLIDGLRSSSHSFPCDCYHSEFCVICSIRAQIECSLASSGGMVSPWKLVKNLSYFSSSFSRYQQEDAHEFMQCALDKLDRRFLDLKENSKSFEGVNLVDNIFGGRLLSKLRCSNCGHSSNTYEPLIDMSLEIENVDTLPNALESFTKLEQIESNFKCDNCKVEVTLEKQLLLDQTPSVAAFHLKRFKTDGNLVEKIDKQVDFPLELDLKLYSVSDHNSNESMEYDLYAVVVHIGLSATSGHYFCYVRSAPDIWHKLDDSKVTRVSAESVLSQEAYILFYARQGTPWFSNIMESPLPCLDPSIWDTSPKSVLDRVDSSDKSTPIITTNIVRDGASESKESSEPNQESVGLKAVKNIIQAPVGKGAMLNVSTLVDGDLHVECGDSDKKNNNDGFNDLTPPSSPPHDFPDRSYHIPRDHLKKSSESAKRPKSKSKYIGDTENSERKTAVRYASKMHGSRRDTILALVECNGKALNKRKEVDSSLCKENSHRRVPKKPNHASVMRPVAAGVHNK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0466 673 MobiDBLite consensus disorder prediction 1 24 - -
Lal16g0466 673 Gene3D Cysteine proteinases 139 447 - -
Lal16g0466 673 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 141 445 IPR028889 -
Lal16g0466 673 MobiDBLite consensus disorder prediction 570 605 - -
Lal16g0466 673 MobiDBLite consensus disorder prediction 647 673 - -
Lal16g0466 673 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 387 405 IPR018200 GO:0004843|GO:0006511
Lal16g0466 673 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 130 472 - -
Lal16g0466 673 Pfam Ubiquitin carboxyl-terminal hydrolase 142 442 IPR001394 GO:0004843|GO:0016579
Lal16g0466 673 MobiDBLite consensus disorder prediction 545 605 - -
Lal16g0466 673 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 142 157 IPR018200 GO:0004843|GO:0006511
Lal16g0466 673 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 130 472 - -
Lal16g0466 673 SUPERFAMILY Cysteine proteinases 140 444 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0466 Lal-Chr16 2885801 2891214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0466 132 508 Miscellaneous Gene Families AT4G31670 31.347 1.93e-51 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0466 K11855 - jre:118346107 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0466 16 2885801 2891214 Lal16g0466 16 2885801 2891214 ECH
Lal16g0466 16 2885801 2891214 Lal23g1118 23 12738076 12742391 LSH