Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1053 ATGGCTCTCATCCTAGAATCTCCACAGGGTGAAGGAGAAATGGGGCTGACATTCACGAAGCTTTTCAGTCGGCTTTTCGCAAAGAAGGAAATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCCTCTACAAGCTCAAGCTTGGAGAGATCGTCACTACTATTCCCACTATTGGGTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTCACTGTTTGGGATGTTGGTGGCCAGGACAAGATTCGTCCCTTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTTATTTTTGTCGTTGATAGCAATGATAGGGACAGAGTTGTTGAGGCCAGAGATGAGTTACATAGGATGTTGAATGAGGATGAACTGAGAGATGCTGTACTGCTCGTGTTTGCCAACAAACAAGATCTTCCTAATGCGATGAATGCTGCTGAGATTACTGACAAGCTGGGTCTCCACTCCCTCAGACAGCGTCACTGGTACATCCAGAGCACTTGTGCAACCTCTGGGGAGGGTCTTTATGAAGGTTTGGACTGGCTTTCCAACAACATAGCCAATAAGGCTTAA 585 0.465 MALILESPQGEGEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1053 194 PANTHER ADP RIBOSYLATION FACTOR-RELATED 14 194 IPR024156 GO:0005525
Lal23g1053 194 ProSiteProfiles small GTPase Arf family profile. 24 190 - -
Lal23g1053 194 PRINTS GTP-binding SAR1 protein signature 32 55 IPR006689 GO:0003924|GO:0005525
Lal23g1053 194 PRINTS GTP-binding SAR1 protein signature 60 84 IPR006689 GO:0003924|GO:0005525
Lal23g1053 194 PRINTS GTP-binding SAR1 protein signature 87 112 IPR006689 GO:0003924|GO:0005525
Lal23g1053 194 PRINTS GTP-binding SAR1 protein signature 132 153 IPR006689 GO:0003924|GO:0005525
Lal23g1053 194 SMART arf_sub_2 14 194 - -
Lal23g1053 194 TIGRFAM small_GTP: small GTP-binding protein domain 29 170 IPR005225 GO:0005525
Lal23g1053 194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 192 IPR027417 -
Lal23g1053 194 SMART rab_sub_5 31 193 - -
Lal23g1053 194 CDD Arf1_5_like 31 189 IPR045872 GO:0003924
Lal23g1053 194 SMART sar_sub_1 14 190 IPR006689 GO:0003924|GO:0005525
Lal23g1053 194 Pfam ADP-ribosylation factor family 18 190 IPR006689 GO:0003924|GO:0005525
Lal23g1053 194 Gene3D - 17 194 IPR027417 -
Lal23g1053 194 PANTHER ADP-RIBOSYLATION FACTOR A1F 14 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1053 Lal-Chr23 12274971 12278548 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1053 K07937 - oeu:111406343 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1053 23 12274971 12278548 Lal23g1053 23 12274971 12278548 ECH
Lal15g0484 15 3309398 3312921 Lal23g1053 23 12274971 12278548 LSH