Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0484 ATGGGGCTTACATTCACGAAGCTTTTCAGTCGTCTTTTCGCGAAGAAGGAAATGAGAATTCTGATGGTTGGTCTTGACGCTGCTGGTAAGACCACTATCCTCTACAAGCTCAAGCTTGGAGAGATCGTCACAACTATTCCCACAATCGGGTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGTGGCCAGGACAAGATCCGTCCCTTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTTATATTTGTCGTTGATAGCAATGACAGGGACAGAGTTGTTGAGGCCAGAGATGAGTTGCACAGGATGTTGAATGAGGATGAACTGAGAGATGCTGTGTTGCTTGTGTTTGCCAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAGATTACTGACAAACTGGGTCTCCACTCCCTCAGACAGCGCCACTGGTACATTCAGAGCACCTGTGCAACCTCTGGGGAGGGTCTTTATGAAGGTTTGGACTGGCTTTCCAACAACATAGCCAATAAGGTAGCTATTGCTTTCTTCCCTCTGCTTAATGCTTTTTGGGGACTCTTGTGGATCGGCAATTCTGGATGCAGAGTTGAATATTATCTAGCTTTTATTTCTTGA 642 0.4595 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVAIAFFPLLNAFWGLLWIGNSGCRVEYYLAFIS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0484 213 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Lal15g0484 213 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Lal15g0484 213 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Lal15g0484 213 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Lal15g0484 213 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Lal15g0484 213 Gene3D - 5 184 IPR027417 -
Lal15g0484 213 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Lal15g0484 213 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Lal15g0484 213 TIGRFAM small_GTP: small GTP-binding protein domain 16 156 IPR005225 GO:0005525
Lal15g0484 213 PANTHER ADP-RIBOSYLATION FACTOR A1F 1 180 - -
Lal15g0484 213 SMART arf_sub_2 1 181 - -
Lal15g0484 213 SMART rab_sub_5 18 180 - -
Lal15g0484 213 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 180 IPR024156 GO:0005525
Lal15g0484 213 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Lal15g0484 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 179 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0484 Lal-Chr15 3309398 3312921 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0484 K07937 - ncol:116259375 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0484 15 3309398 3312921 Lal15g0484 15 3309398 3312921 ECH
Lal15g0484 15 3309398 3312921 Lal23g1053 23 12274971 12278548 LSH