Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1031 ATGGCTCTTTCACGCATAGCATCTTCATCATCTTCTTCTTCTTCCATCTTGAAACCCATCTCCACCGTTCTAACCCTCCGCCGTCCCCTCTCCTCCGACACCACCCTCACAATCGAGACCTCTATTCCATTCACCGCCCACAACTGCGACGCGCCCTCACGCGCCGTCGAAACCTCCCCCTCCGAGCTTCTTACATTCTACCGCAACATGGCCGTCATGCGCCGTATGGAGATCGCCGCCGATTCGCTCTACAAGTCGAAGCTCATTCGCGGCTTCTGTCACCTCTACGACGGTCAGGAAGCCGTGGCTATTGGTATGGAAGCCGCTACCAATAAGAAGGATTGCATCATCACTGCCTACCGTGATCATTGCACCTTCCTCGGTCGCGGCGGCACCCTTCTCGAGGTTTTCTCTGAGCTCATGGGCCGTAAAGGTGGCTGCTCCAAAGGTAAGGGTGGTTCCATGCACTTCTACAAGAAGGATTCTGGATTCTATGGTGGCCATGGCATTGTTGGAGCACAAGTTCCGCTTGGCTGTGGCTTGGCATTTGCTCAGAAGTACTTAAAGGATGAGAATGTGACATTTGCTCTGTATGGTGATGGTGCTGCTAATCAGGGGCAGTTGTTTGAGGCGCTTAACATTGCAGCGCTTTGGGATCTTCCTGCCATCTTGGTTTGCGAGAATAATCACTATGGAATGGGAACAGCGGAGTGGAGAGCTGCTAAGAGCCCTTCTTATTACAAGCGTGGAGATTATGTTCCCGGATTGAAGGTAGATGGCATGGATGTTCTTGCTGTAAAACAGGCTTGCAAATTTGCAAAGGAGCATGCTCTGAAGAATGGGCCCCTTATTCTTGAAATGGACACTTACAGATACCATGGCCACTCCATGTCTGATCCTGGAAGCACATACCGCACACGTGATGAAATTTCTGGTGTCAGACAGGAGCGTGATCCAATCGAGAGAATAAAAAAGCTATTGCTCTCTCATGAGATTGCTACCGAAAAAGAGCTCAAGGATACTGAAAAGGAAGTCAGAAAAGAAGTTGATGAAGCCATTGCTAAAGCAAAGGAAAGTCAAATGCCGGATCCATCTGATCTATTTACCAATATATATGTTAAAGGTTATGGAGTTGAGGCATTTGGTGCTGATAGGAAAGAAATTAGAGCTACTTTGCCATAA 1182 0.4865 MALSRIASSSSSSSSILKPISTVLTLRRPLSSDTTLTIETSIPFTAHNCDAPSRAVETSPSELLTFYRNMAVMRRMEIAADSLYKSKLIRGFCHLYDGQEAVAIGMEAATNKKDCIITAYRDHCTFLGRGGTLLEVFSELMGRKGGCSKGKGGSMHFYKKDSGFYGGHGIVGAQVPLGCGLAFAQKYLKDENVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALKNGPLILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIKKLLLSHEIATEKELKDTEKEVRKEVDEAIAKAKESQMPDPSDLFTNIYVKGYGVEAFGADRKEIRATLP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1031 393 CDD TPP_E1_PDC_ADC_BCADC 66 356 - -
Lal23g1031 393 MobiDBLite consensus disorder prediction 296 315 - -
Lal23g1031 393 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 51 374 IPR029061 -
Lal23g1031 393 Coils Coil 335 355 - -
Lal23g1031 393 Gene3D - 21 388 - -
Lal23g1031 393 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, MITOCHONDRIAL 11 393 - -
Lal23g1031 393 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 11 393 - -
Lal23g1031 393 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 61 373 IPR017597 GO:0004739|GO:0006086|GO:0043231
Lal23g1031 393 Pfam Dehydrogenase E1 component 69 364 IPR001017 GO:0016624
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1031 Lal-Chr23 12115033 12120336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1031 1 393 Acyl Lipid Metabolism Gene Families AT1G24180 79.040 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1031 K00161 - tcc:18609342 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1031 23 12115033 12120336 Lal23g1031 23 12115033 12120336 ECH
Lal16g0574 16 3699792 3707014 Lal23g1031 23 12115033 12120336 LSH
Lal15g0516 15 3555444 3561332 Lal23g1031 23 12115033 12120336 LSH