Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0574 ATGGCTCTTTCACGCATAGCATCTTCATCATCCTCTTCTTCCATCTTGAAACCCATCTCCGCCGCCTTATCCCTCCGCCGTCCTCTTTCCTCCGACACCACCCTCACCATCGAGACCTCCATCCCCTTCACCGCCCACAATTGCGACGCTCCCTCACGCGCCGTCGAAACCTCCCCCGCCGAGCTTCTCAAATTCTACCGCGACATGGCGTTAATGCGCCGTATGGAGATCGCCTCTGATTCGCTCTATAAGTCGAAGCTCATCCGCGGTTTCTGCCACCTTTACGACGGTCAGGAAGCCGTGGCTATTGGTATGGAAGCCGCTACGAATAGGAAGGATTGCATCATCACTGCCTACCGTGACCATTGCACCTTCCTCGGCCGCGGCGGAGACCTTGTTCAGGTCTTTTCCGAGCTCATGGGCCGTCAAGGTGGCTGCTCCAAAGGTAAGGGTGGTTCCATGCACTTCTACAAGAAGGATTCTGGATTCTATGGTGGCCATGGCATTGTTGGAGCACAAGTTCCGCTTGGTTGTGGCTTGGCATTTGCTCAGAAATACTCAAAGGATGAGAATGTGACATTTGCTTTGTATGGTGATGGTGCTGCCAATCAAGGGCAGTTGTTTGAGGCACTCAACATTGCTGCACTTTGGGATCTTCCTGCTATCTTGGTCTGCGAGAATAATCATTATGGAATGGGAACAGCAGAGTGGAGGGCTGCCAAGAGTCCTGCTTATTACAAGCGTGGGGACTATGTTCCCGGATTGAAGGTAGATGGCATGGATGTTCTTGCTGTAAAACAGGCTTGCAAATTTGCAAAGGAGCATGCTCTGAAGAATGGGCCTCTTATTCTTGAAATGGACACTTACAGATACCATGGCCACTCCATGTCTGATCCTGGAAGCACATACCGCACACGTGATGAAATTTCTGGTGTCAGACAGGAGCGTGATCCAATCGAGAGAATAAAAAAGCTATTGTTGTCTCACGATATTGCTACTGAAAAGGAGCTCAAGGACACTGAAAAGGAAGCCAGAAAACAAGTTGATGAAGCCATTGCTAAAGCCAAGGAGAGTCCAGTGCCGGATCCATCTGAACTATTTACCAACATATATGTTAAAGGATATGGGGTTGAGTCATTTGGTGCGGACCGTAAAGAAGTCAGAGCTACTTTGCCATGA 1179 0.497 MALSRIASSSSSSSILKPISAALSLRRPLSSDTTLTIETSIPFTAHNCDAPSRAVETSPAELLKFYRDMALMRRMEIASDSLYKSKLIRGFCHLYDGQEAVAIGMEAATNRKDCIITAYRDHCTFLGRGGDLVQVFSELMGRQGGCSKGKGGSMHFYKKDSGFYGGHGIVGAQVPLGCGLAFAQKYSKDENVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALKNGPLILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIKKLLLSHDIATEKELKDTEKEARKQVDEAIAKAKESPVPDPSELFTNIYVKGYGVESFGADRKEVRATLP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0574 392 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 50 373 IPR029061 -
Lal16g0574 392 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, MITOCHONDRIAL 9 392 - -
Lal16g0574 392 Gene3D - 19 386 - -
Lal16g0574 392 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 61 372 IPR017597 GO:0004739|GO:0006086|GO:0043231
Lal16g0574 392 MobiDBLite consensus disorder prediction 295 314 - -
Lal16g0574 392 CDD TPP_E1_PDC_ADC_BCADC 65 355 - -
Lal16g0574 392 Coils Coil 334 354 - -
Lal16g0574 392 Pfam Dehydrogenase E1 component 68 363 IPR001017 GO:0016624
Lal16g0574 392 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 9 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0574 Lal-Chr16 3699792 3707014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0574 1 392 Acyl Lipid Metabolism Gene Families AT1G24180 80.253 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0574 K00161 - tcc:18609342 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0574 16 3699792 3707014 Lal16g0574 16 3699792 3707014 ECH
Lal16g0574 16 3699792 3707014 Lal15g0516 15 3555444 3561332 LSH
Lal16g0574 16 3699792 3707014 Lal23g1031 23 12115033 12120336 LSH