Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0996 ATGTCTATCACCCAAAATCTCACTGCCACTTCATTCTCTTCTTCATCCTCTGCTTTCTTAGCTCCGTCTACCTTCTATTCTAGGAGCCAGGTGTCGTTGCCTGTGAAAAGCGTGGGAATTTGCAAATGCGTTGCGGCACCCCAAGAAGCTGACACTGTGTACAAGACAAAGGTCTCTCGCAATGGAAATATAGCTAAACTTCAAGCTGGCTATCTCTTTCCAGAGATCGCTAGAAGGAGGAACGCACACTTGCTGAAGTTCCCAGATGCAAAAATAATAAGCCTCGGAATTGGTGATACTACTGAACCCATTCCTGAAGTCATAACTTCTGCAATGGCAAAGAGATCATATGCATTGTCAACCTTGGAAGGATATAGTGGTTATGGAGCTGAACAAGGTGAAAAGATTGAGAGACATGTCTACTCTATGCAGCCAGTAAGAAGCGCAATTGCTTCATCATTTTACAAGGATCTTGGCATAGACGATGACGACATATTTGTCTCAGATGGAGCAAAATGTGACATATCTCGCCTTCAGATTGTCTTTGGATCAAATGTAAAAATGGCCGTGCAAGACCCATCATACCCGGCCTATGTAGACTCAAGTGTAATTATGGGCCAGACTGGCTTCTACCAAAAGGATGTTGAGAAGTTTGCAAATATCGAGTACATGAAGTGTAAACCTGAAAATGGTTTCTTCCCTGATTTGTCTTCTATTTCTCGACCAGATATAATTTTTTTCTGTTCGCCGAACAATCCTACTGGTGCTGCTGCAACAAGGGAGCAACTGACCCAACTAGTTCAGTTTGCTAAGGACAACGGGTCTATAATAGTTTATGATTCAGCATATGCAATGTACATTTCTGGTGACAATCCGCGCTCCATCTTTGAAATTCCTGGAGCCAAAGAGGTTGCCCTCGAGACTTCATCATTTAGCAAGTATGCTGGGTTCACGGGAGTTCGATTAGGTTGGACTGTGGTTCCAAAGCAGTTATTGTTTTCTGATGGATTTCCCGTTGCCAAAGACTTCAATCGTATTGTATCTACCTGCTTCAATGGCGCATCAAATATTTCCCAGGCAGGTGGTCTGGCTTGCCTTTCACCAGAAGGCCTTAAGGCTATGCGAGAAGTGATTGGATTCTACAAAGAAAACACTGACATAATAGTGGAAACATTTGATTCACTTGGTTTCAAAGTCTACGGAGGGAAAAATGCACCATACGTGTGGGTCTATTTCCCGGGTCGAAGCTCATGGGATGTATTCAGTGAGATTCTTGAGAAGACTCATGTGGTTACAACTCCAGGTAGTGGTTTTGGACCTGGTGGTGAAGGTTTTGTCAGGGTTAGTGCCTTCGGTCACAGGGAAAATGTCTTGGAGGCATGCAGAAGATTCAAGCAGCTATACAAGTGA 1410 0.4369 MSITQNLTATSFSSSSSAFLAPSTFYSRSQVSLPVKSVGICKCVAAPQEADTVYKTKVSRNGNIAKLQAGYLFPEIARRRNAHLLKFPDAKIISLGIGDTTEPIPEVITSAMAKRSYALSTLEGYSGYGAEQGEKIERHVYSMQPVRSAIASSFYKDLGIDDDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGFYQKDVEKFANIEYMKCKPENGFFPDLSSISRPDIIFFCSPNNPTGAAATREQLTQLVQFAKDNGSIIVYDSAYAMYISGDNPRSIFEIPGAKEVALETSSFSKYAGFTGVRLGWTVVPKQLLFSDGFPVAKDFNRIVSTCFNGASNISQAGGLACLSPEGLKAMREVIGFYKENTDIIVETFDSLGFKVYGGKNAPYVWVYFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENVLEACRRFKQLYK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0996 469 PANTHER AMINOTRANSFERASE 11 469 IPR019942 GO:0008483
Lal23g0996 469 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 59 466 IPR019942 GO:0008483
Lal23g0996 469 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 11 469 - -
Lal23g0996 469 Pfam Aminotransferase class I and II 144 464 IPR004839 GO:0009058|GO:0030170
Lal23g0996 469 Hamap LL-diaminopimelate aminotransferase [dapL]. 59 467 IPR019942 GO:0008483
Lal23g0996 469 Gene3D Aspartate Aminotransferase, domain 1 72 465 IPR015422 GO:0003824
Lal23g0996 469 SUPERFAMILY PLP-dependent transferases 71 464 IPR015424 -
Lal23g0996 469 CDD AAT_like 93 466 - -
Lal23g0996 469 Gene3D - 102 368 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0996 Lal-Chr23 11861757 11868226 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0996 K10206 - gmx:100801405 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0996 23 11861757 11868226 Lal23g0996 23 11861757 11868226 ECH
Lal15g0566 15 3921055 3926945 Lal23g0996 23 11861757 11868226 LSH