Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0566 ATGTCTATCACCCAAAACCTCACTGCTACTTCAATCTCTTCATCTTCCTCTGTTTTCTTCGCTCCTTCTACCTTCAATTCTAGGAGCCAGGTGTCATTGCCTGTGAAAAGCGTTGGAATTTTAAAATGTGTTGCGGCACCCCAAGAAGCTGAGACTGCTTACAAAACAAAGGTCTCTCGCAATGAAAATATTACTAAACTTCAAGCTGGCTATCTCTTTCCAGAGATTGCTAGAAGGAAGAATGCACACTTGCTGAAGTTTCCTGATGCAAAAATAATAAGCCTCGGAATTGGTGATACTACAGAACCCATTCCTGAAGTCATAACTTCTGCAATGGCAAAGAAATCGTATGCATTGTCAACCTTGGAAGGATATAGTGGTTATGGAGCTGAGCAAGGTGAAAAGCCATTAAGAAGCGCAATTGTTTCAACATATTACAAGGATCTTGGCATAGACGATGACGATATATTTGTATCAGATGGAGCAAAATGTGATATATCTCGCCTTCAGGTTGTCTTCGGATCAAATGTAAAAATGGCTGTCCAAGACCCATCATACCCGGCCTACGTAGACTCAAGTGTGATTATGGGCCAGACTGGCTTCTATCAAAAGGATGTTCAGAAGTTTGCAAACATCGAGTACATGAAGTGTAAACCTGAAAATGGTTTCTTCCCTGATTTGTCTTCTATTTCTCGACCAGATATAATTTTTTTCTGTTCGCCGAACAATCCTACTGGTGCTGCTGCAACGAGGGAGCAACTGACCCAACTAGTTCAGTTTGCTAAGGACAACGGGTCTATAATTGTCTACGATTCAGCATATGCAATGTACATTTCTGGTGACAATCCACGCTCCATCTTTGAAATTCCTGGAGCCAAAGAGGTTGCCCTTGAGACTGCGTCATTTAGCAAGTATGCTGGCTTCACTGGAGTTCGATTGGGTTGGACTGTGATTCCAAAGCAGTTGCTGTTTTCTGATGGATTTCCTGTTGCCAAAGACTTCAATCGTATTGTATCTACTTGCTTCAATGGCGCATCGAATATTTCCCAGGCCGGTGGTTTGGCTTGCCTTTCACCAGAAGGTCTTAAGGCTATGCGAGATGTTATTGGATTCTACAAGGAAAATACTGACATAATAGTGGAAACATTTGATTCACTTGGTTTCAAAGTCTATGGAGGGGAAAATGCACCATATGTGTGGGTCTATTTCCCGGGTCGAAGCTCATGGGATGTATTCGGTGAGATTCTTGAAAAGACTCATGTGGTTACAACTCCCGGTAGTGGTTTTGGACCTGCTGGGGAAGGTTTTATCAGGGTTAGTGCCTTTGGTCACAGAGAAAATGTCTTGGAGGCATGCAGAAGATTCAAGCAGCTATACAAGTGA 1383 0.4266 MSITQNLTATSISSSSSVFFAPSTFNSRSQVSLPVKSVGILKCVAAPQEAETAYKTKVSRNENITKLQAGYLFPEIARRKNAHLLKFPDAKIISLGIGDTTEPIPEVITSAMAKKSYALSTLEGYSGYGAEQGEKPLRSAIVSTYYKDLGIDDDDIFVSDGAKCDISRLQVVFGSNVKMAVQDPSYPAYVDSSVIMGQTGFYQKDVQKFANIEYMKCKPENGFFPDLSSISRPDIIFFCSPNNPTGAAATREQLTQLVQFAKDNGSIIVYDSAYAMYISGDNPRSIFEIPGAKEVALETASFSKYAGFTGVRLGWTVIPKQLLFSDGFPVAKDFNRIVSTCFNGASNISQAGGLACLSPEGLKAMRDVIGFYKENTDIIVETFDSLGFKVYGGENAPYVWVYFPGRSSWDVFGEILEKTHVVTTPGSGFGPAGEGFIRVSAFGHRENVLEACRRFKQLYK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0566 460 SUPERFAMILY PLP-dependent transferases 59 456 IPR015424 -
Lal15g0566 460 Pfam Aminotransferase class I and II 91 455 IPR004839 GO:0009058|GO:0030170
Lal15g0566 460 CDD AAT_like 93 457 - -
Lal15g0566 460 Hamap LL-diaminopimelate aminotransferase [dapL]. 59 458 IPR019942 GO:0008483
Lal15g0566 460 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 59 457 IPR019942 GO:0008483
Lal15g0566 460 PANTHER AMINOTRANSFERASE 10 460 IPR019942 GO:0008483
Lal15g0566 460 Gene3D Aspartate Aminotransferase, domain 1 72 456 IPR015422 GO:0003824
Lal15g0566 460 Gene3D - 102 359 IPR015421 GO:0003824
Lal15g0566 460 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 10 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0566 Lal-Chr15 3921055 3926945 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0566 K10206 - gmx:100801405 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0566 15 3921055 3926945 Lal15g0566 15 3921055 3926945 ECH
Lal15g0566 15 3921055 3926945 Lal23g0996 23 11861757 11868226 LSH