Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0781 AATACTTTCCGTTGCTTACAGTTCCGTCTCCCAAACTCAGATCCACCATCTCCGATTGATATTCCGATGCCGGTGTCTGCTTCCGCCATCTACTTTCTCAACCTCCGCGGAGACGTTCTCATCAACCGCCTCTACCGCGACGATGTCGGGGGAAACATGGTGGATGCGTTTCGGACGCATATTATGCAAACAAAGGAACTTGGTGTCTGTCCTGTGAGGCAGATTGGTGGCTGCTCTTTTTTTTACATGAAGATCAGCAATGTTTACATTGTCATTGTTGTCAGCTCCAATGCTAATGTAGCTTGCGCTTTCAAGTTTGTCGTTGAGGCTGTTGCACTGTTCAAATCTTATTTTGGTGGAGCTTTTGATGAGGATGCAATTCGCAATAATTTTGTACTCATTTATGAGCTACTGGATGAAATTATGGATTTTGGTTACCCACAAAATCTTTCACCAGAGATCTTAAAGCTTTATATCACTCAGGAAGGAGTGCGCTCCCCCTTTTCATCAAAGGCTGCAGATAAAGCTGTTCCAAATGCGACTTTGCAAGTTACTGGAGCTGTTGGATGGCGGAGAGAAGGCCTTGTCTACAAAAAGAATGAGGTATTCCTAGATATTGTAGAAAGCGTGAATCTTCTAATGTCTTCAAAAGGTAGTGTTCTACGTTGTGATGTAACGGGGAAGGTTCTTATGAAGTGCTTTCTCTCTGGAATGCCTGATTTAAAGTTGGGTTTGAATGACAAGATTGGTCTTGAGAAAGAGTCACAACTTAAATCCCGCCCTACTAAAAGTGGTAAAACTATCGAGCTTGATGATGTCACTTTCCATCAATGTGTAAATTTAACAAGGTTCAACGCAGAGAAGACTGTTAGTTTTGTGCCACCTGATGGTGAATTTGAACTTATGAAGTATCGTATCACCGAGGGAGTTAATCTTCCCTTCAAAGTATTGCCAACCATCAAGGAACTTGGTCGAACACGGATGGAAGTGAATGTTAAGGTAAAGAGTGTTTTTAGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAAATTCCAGTGCCAAAACAAACAGCAAAAACAAATTTCACAGTTACTTCGGGCAAAGCAAAATACAATGCATCTATAGATTGTTTGGTTTGGAAGATTAGAAAATTCCCTGGGCAAACTGAGTCAACCTTGAGTGCAGAAGTTGAACTTATTTCCACAATGACAGAAAAGAAGTCTGCCACTAAACCACCAATACAGATGGAGTTTCAGGTTCCCATGTTCACAGCATCTGGTTTACGTGTCCGTTTTCTAAAGGTGTGGGAGAAGAGTGGATACAATACTGTTGAGTGGGTTCGTTATATTACAAAAGCAGGGTCATATGAGATTAGGTGCTAA 1383 0.4158 NTFRCLQFRLPNSDPPSPIDIPMPVSASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGVCPVRQIGGCSFFYMKISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKAADKAVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNAEKTVSFVPPDGEFELMKYRITEGVNLPFKVLPTIKELGRTRMEVNVKVKSVFSAKMFALGVVVKIPVPKQTAKTNFTVTSGKAKYNASIDCLVWKIRKFPGQTESTLSAEVELISTMTEKKSATKPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0781 460 CDD AP2_Mu_N 28 166 IPR043532 -
Lal23g0781 460 CDD AP-2_Mu2_Cterm 197 459 IPR043512 -
Lal23g0781 460 Gene3D Mu homology domain, subdomain B 312 459 - -
Lal23g0781 460 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 188 459 IPR036168 -
Lal23g0781 460 Pfam Adaptor complexes medium subunit family 189 460 IPR028565 -
Lal23g0781 460 PANTHER AP COMPLEX SUBUNIT MU 25 460 - -
Lal23g0781 460 PIRSF AP_complex_mu 26 460 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal23g0781 460 ProSiteProfiles Mu homology domain (MHD) profile. 199 459 IPR028565 -
Lal23g0781 460 PANTHER BNAA02G36830D PROTEIN 25 460 - -
Lal23g0781 460 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 188 208 IPR018240 GO:0006886|GO:0016192|GO:0030131
Lal23g0781 460 Gene3D - 27 167 - -
Lal23g0781 460 PRINTS Clathrin coat assembly protein signature 37 57 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal23g0781 460 PRINTS Clathrin coat assembly protein signature 124 151 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal23g0781 460 PRINTS Clathrin coat assembly protein signature 190 218 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal23g0781 460 PRINTS Clathrin coat assembly protein signature 270 297 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal23g0781 460 PRINTS Clathrin coat assembly protein signature 339 354 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal23g0781 460 PRINTS Clathrin coat assembly protein signature 379 390 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal23g0781 460 Gene3D Mu homology domain, subdomain B 196 455 - -
Lal23g0781 460 SUPERFAMILY SNARE-like 28 164 IPR011012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0781 Lal-Chr23 10334369 10340369 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0781 K11826 - sind:105165161 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0781 23 10334369 10340369 Lal23g0781 23 10334369 10340369 ECH
Lal15g0821 15 6050084 6055827 Lal23g0781 23 10334369 10340369 LSH