Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0821 ATGCAGATGCGATTTACTCGATTTATGTTTAACTTTTTTAAAATTTCATGCTCTCAATTCTTCACCAAATCACCGACGACGCTTTCCGTTAGTTACCGCTCCCTCTCCCAACCCCAGATTCACCGTCTCCGTCAATCTCCGGTTGATCTTCCGATGCCGGTGGCTGCTTCCGCCATCTACTTCCTCAACCTCCGGGGCGACGTTCTCATCAACCGCCTCTACCGTGACGATGTCGGGGGAAATATGGTTGATGCGTTTCGGACCCATATTATGCAAACAAAGGAACTTGGTGTCTGTCCTGTGAGGCAAATTGGTGGCTGCTTTTTCTTTTACATGAAGATCAGTAATGTTTACATTGTCATTGTTGTCAGCTCCAATGCTAATGTAGCTTGTGCTTTCAAATTTGTCGTTGAGGCTGTTGCACTGTTCAAATCTTATTTTGGTGGAGCTTTTGATGAGGATGCTATTCGCAATAATTTTGTACTCATTTACGAGCTACTGGATGAAATTATGGATTTTGGTTACCCACAAAATCTTTCACCAGAGATCTTAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCTCCATTTTCATCCAAGGCTGCAGATAAAGCTGTTCCAAATGCGACTTTGCAAGTTACTGGAGCTGTTGGATGGCGGAGAGAAGGCCTTGTCTACAAAAAGAATGAAGTCTTCCTAGATATTGTAGAAAGTGTGAATCTTCTCATGTCTTCAAAAGGTAGTGTTCTACGTTGTGATGTCACGGGGAAGGTTCTTATGAAGTGCTTTCTCTCTGGAATGCCTGACTTAAAGTTGGGTTTGAATGACAAGATTGGTCTTGAGAAAGAGTCAGAACTTAAATCCCGCCCTACTAAAAGCGGTAAAACTATCGAGCTTGATGATGTCACTTTCCATCAATGTGTAAATTTGACAAGGTTCAATGCAGAGAAGACTGTTAGTTTTGTGCCACCTGATGGTGAATTTGAACTAATGAAGTATCGTATCACTGAGGGAGTTAATCTTCCCTTTAAAGTATTGCCAACCATCAAGGAACTTGGTCGAACACGGATGGAAGTGAATGTTAAGGTAAAGAGTGTTTTTAGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAAATTCCAGTGCCAAAACAAACAGCAAAAACAAATTTCACAGTTACTTCGGGCAAAGCAAAATACAATGCATCTATAGATTGTTTGGTTTGGAAGATTAGAAAATTCCCTGGGCAAACTGAGTCAACCTTGAGTGCAGAAGTTGAACTTATTTCCACAATGACAGAAAAGAAGTCTGCCACTAAACCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACAGCATCTGGTTTACGTGTCCGTTTTCTTAAGGTGTGGGAGAAGAGTGGGTACAATACCGTTGAGTGGGTTCGTTATATTACAAAAGCAGGGTCATACGAGATTAGGTGCTAA 1470 0.4163 MQMRFTRFMFNFFKISCSQFFTKSPTTLSVSYRSLSQPQIHRLRQSPVDLPMPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGVCPVRQIGGCFFFYMKISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKAADKAVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLEKESELKSRPTKSGKTIELDDVTFHQCVNLTRFNAEKTVSFVPPDGEFELMKYRITEGVNLPFKVLPTIKELGRTRMEVNVKVKSVFSAKMFALGVVVKIPVPKQTAKTNFTVTSGKAKYNASIDCLVWKIRKFPGQTESTLSAEVELISTMTEKKSATKPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0821 489 PANTHER AP COMPLEX SUBUNIT MU 54 489 - -
Lal15g0821 489 Gene3D Mu homology domain, subdomain B 341 488 - -
Lal15g0821 489 SUPERFAMILY SNARE-like 57 193 IPR011012 -
Lal15g0821 489 PIRSF AP_complex_mu 55 489 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal15g0821 489 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 217 237 IPR018240 GO:0006886|GO:0016192|GO:0030131
Lal15g0821 489 PANTHER BNAA02G36830D PROTEIN 54 489 - -
Lal15g0821 489 Gene3D - 56 196 - -
Lal15g0821 489 ProSiteProfiles Mu homology domain (MHD) profile. 228 488 IPR028565 -
Lal15g0821 489 Gene3D Mu homology domain, subdomain B 225 484 - -
Lal15g0821 489 CDD AP-2_Mu2_Cterm 226 488 IPR043512 -
Lal15g0821 489 Pfam Adaptor complexes medium subunit family 218 489 IPR028565 -
Lal15g0821 489 CDD AP2_Mu_N 57 195 IPR043532 -
Lal15g0821 489 PRINTS Clathrin coat assembly protein signature 66 86 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal15g0821 489 PRINTS Clathrin coat assembly protein signature 153 180 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal15g0821 489 PRINTS Clathrin coat assembly protein signature 219 247 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal15g0821 489 PRINTS Clathrin coat assembly protein signature 299 326 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal15g0821 489 PRINTS Clathrin coat assembly protein signature 368 383 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal15g0821 489 PRINTS Clathrin coat assembly protein signature 408 419 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal15g0821 489 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 217 488 IPR036168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0821 Lal-Chr15 6050084 6055827 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0821 K11826 - sind:105165161 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0821 15 6050084 6055827 Lal23g0781 23 10334369 10340369 LSH