Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0769 ATGGCTTCTTCACTCCTTCAACCTTTTTCTTCTCTCTTCACTCTAACTTCTCATTCCTCCACTCTTCGAACCTTAGCACCTTCAATTCTTCATTCTCGTACCACTACTCGAATCTTCGCACCTTATAGCGTGAAATGTGATTTGGTTGAACCTTCAAATATAATGAACCGGAAACCGATCATTCCGGTTCTGAATGAAACGACGACGTTGCCCAGGTTTATGGAGAAAACCGGCAACAAAAACGGTAACCGGTTAAAATTGTTTTCTGGCACCGCCAATACTTGTCTTTCCCAGGAAATTGCTTGGTACATGGGCTTGGATCTTGGGAAGATTTCCATAAAGCGATTTGCAGATGGTGAAATATATGTCCAGTTACAAGAGAGTGTCAGAGGATGCAATGTATACCTTATACAGCCAACATGTCCTCCTGCAAATGAGAATATCATGGAGCTTATGATAATGATTGATGCTTGTCGAAGGGCATCGGCCAAAAATATCACTGTCGTGATTCCCTATTTTGGATATGCTAGAGCTGATAGAAAGGCAAGGCGTGAATCCATTGCAGCAAAACTTGTTGCAAACCTTATTACAAAAGCTGGGGCTGACCGTGTTCTTGCTTGTGACCTTCATTCAGGGCAATCCATGGGTTACTTTGATATTCCTGTAGATCACGTTCATTGTCAACCTGTGATCCTCGATTATCTTGCCAGCAAGAGTATAAGTTCAAATGAGTTGGTAGTTGTTTCCCCGGATGTTGGTGGTGTTGCAAGGGCACGTGCTTTTGCGAAAAAATTATCTGATGCACCTTTAGCTATTATAGACAAAAGGCGACATGGACACAACGTAGCTGAGGTGATGAACCTGATTGGTGATGTAAAAGGCAAAGTTGCAGTGATGGTGGATGATATGATTGACACTGCTGGGACCATCGCTAAGGGCGCGGCACTGTTACACGAAGAGGGAGCCAGGGAAGTGTATGCATGCTGCATTCATGCAGTTTTCAGCCCTTCTGCAATTGAGAGGTTGTCAAGTGGCTTATTTCAAGAAGTGATTATTACAAACACCATTCCAGTTGCAGAGAAAAACTATTTCCCCCAGTTAACTATTCTCACTGTTGCAAACTTGTTGGGTGAAACTATTTGGCGTATTCAGGATGATAGTTCTGTCAGTAGTATTTTTCAGTGA 1185 0.4278 MASSLLQPFSSLFTLTSHSSTLRTLAPSILHSRTTTRIFAPYSVKCDLVEPSNIMNRKPIIPVLNETTTLPRFMEKTGNKNGNRLKLFSGTANTCLSQEIAWYMGLDLGKISIKRFADGEIYVQLQESVRGCNVYLIQPTCPPANENIMELMIMIDACRRASAKNITVVIPYFGYARADRKARRESIAAKLVANLITKAGADRVLACDLHSGQSMGYFDIPVDHVHCQPVILDYLASKSISSNELVVVSPDVGGVARARAFAKKLSDAPLAIIDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHEEGAREVYACCIHAVFSPSAIERLSSGLFQEVIITNTIPVAEKNYFPQLTILTVANLLGETIWRIQDDSSVSSIFQ 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0769 394 TIGRFAM ribP_PPkin: ribose-phosphate diphosphokinase 86 394 IPR005946 GO:0000287|GO:0004749|GO:0009165
Lal23g0769 394 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 85 394 IPR037515 GO:0004749
Lal23g0769 394 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 85 200 IPR029099 -
Lal23g0769 394 Gene3D - 88 385 IPR029057 -
Lal23g0769 394 SMART Pribosyltran_N_2 85 200 - -
Lal23g0769 394 SUPERFAMILY PRTase-like 150 383 IPR029057 -
Lal23g0769 394 PANTHER RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2, CHLOROPLASTIC 49 393 - -
Lal23g0769 394 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 49 393 IPR005946 GO:0000287|GO:0004749|GO:0009165
Lal23g0769 394 CDD PRTases_typeI 243 355 IPR000836 -
Lal23g0769 394 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 208 223 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Lal23g0769 394 Gene3D - 227 370 IPR029057 -
Lal23g0769 394 Pfam Phosphoribosyl synthetase-associated domain 285 393 IPR005946 GO:0000287|GO:0004749|GO:0009165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0769 Lal-Chr23 10254658 10259999 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0769 K00948 - gmx:100807743 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0769 23 10254658 10259999 Lal23g0769 23 10254658 10259999 ECH
Lal15g0831 15 6166538 6171073 Lal23g0769 23 10254658 10259999 LSH