Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0701 ATGCGTCGGCGAACTCCGACCGCCAAGTTCATTCTCTCTCTCCTCATTTTCTCTCTCCTCCCCCTCTCTCTCCTCGCTCGCCCCTTCGTTCTCGTTCTCTCTCAAGAAGAATTCAAGGACGCCCCCTCCGACGAAGCATCCGCCGTCGATCCCGAATCCGCCGAGTGGGACGAGTTCGGAGACTCCGACGCCGGGAAATCCGAGGAGGAGCTCGATCCTGGGTCGTGGCGCCAAATCTTCGAACCCGATTCAACTTTTTCAACCACCGCCGCTGACCCGTCAACGGAATTGGAAGCTCTGTATTACTCCGGCGTAGGAAAGATGATGTCTGCGGTGACTTCGGCGGAAGTTAGGTTGATGGAGGAGGCCACTGGAGAGATCGAAGCGGCGGCTGAGTCGGGTTACCCAGCGGCGCAATCGGTGCTAGGGTTTCTGTGGGGAATGGGGCTTTTGAGAGAGAGGAGTAAAAGTAAGGCATTTTTGTATCATCATTTTGCTTCAGAAGGTGGGAACATGCAATCGAAGATGGCATTGGCTTATGCCTACACACGCCAAGATATGTTTGAGAAAGCGGTGAAGCTTTATGCTGAATTAGCAGAAGTAGCTGTGAATAGTTTTTTGATTTCCAAAGACTCACCTGTCATTGAACCGGTTAGGCTCCACAATGGAGCTGAAGAGAATAAGGAAGCTCTGAGAAAATCTAAAGGGGAAGAGGATGAGGACTTTCAGATACTGGAGTATCAGGCTCAGAAAGGGAATGCTGGTGCAATGTACAAAGTTGGCCTCTTTTATTACTTCGGGCTTCGAGGTTTGAGGCGTGATCATACCAAGGCACTCTCATGGTTCTTGAAGGCTGTAGAGAAGGGAGAGCCGCGGTCCATGGAACTTCTTGGAGAGATATATGCCAGGGGAGCAGGTGTCGAAAGAAACTACACAAAAGCGCTTGAATGGCTTACACTTGCATCGAAACAGCATCTGTATTCTGCTTATAATGGGATGGGGTATTTATATGTCAAAGGTTATGGAGTCGACAAGAAAAATTACACAAAAGCAAAAGAGTATTTTGAAAAGGCTGCCGATAATGATGAGGTTGGTGGGCACTATAACTTGGGTGTCATGTATCTCAAGGGGATTGGAGTGAAAAGAGATGTGAAGTTGGCGTGTAAGTTCTTTATAGTAGCTGCTAACCATGGTCAGCCAAAGGCATTCTACCAGCTGGCAAAGATTTTCCATATTGGTGTTGGGTTCAAGAAAAATATCCCCTTGGCTACCGCACTGTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTCTATCTAGATGGGCATTAGAGTCATACTTAAAAGGTGATGTTGGCAAGGCATTTATGTTGTATTCAAGAATGGCTGAGATGGGCTATGAGGTAGCACAAAGTAATGCTGCATGGATTCTTGACAAATATGGGGAACGCAACATGTGCATGGGTGAATCTGGATTTTGCACTGATGCAGAAAGGCATCAGCGTGCACATTCTCTCTGGTGGCAAGCTTCTGAGCAGGGCAATGAACATGCTGCTTTACTAATTGGAGATGCATATTACTATGGCCGGGGTACTATTAGGGATTATGAGCGAGCTGCTGAGGCTTACATGCATGCCAAATCACAATCTAATGCACAAGCCATGTTCAATCTCGGGTACATGCATGAGCATGGCCAAGGACTTCCATTTGACCTTCATCTAGCCAAACGTTACTATGATGAAGCTCTAGAGCATGATCCAGCAGCAAAGTTGCCAGTCACACTGGCCCTTGCAAGCTTGTGGGTTCGTAAGAACTATGATGGCAGTTTCTTGGTCCATGTAATTGATTCACTGCCAGAAGTCTATCCCAAATTAGAAGCATGGGTGGAGGAAGTGCTTTTAGAGGAGGGAAATGCCACAATTCTAACCCTATTTGCATGCCTCCTAACAGTTCTGTATCTCCGGGAGCGGCAAAGAAGGCAAGTTGTTGCTGTACCCGGAGAGGTAGCTCAGCCAAATCACCCTAACGATCTTGATGTGCCTGCACTCATTTAG 2055 0.4769 MRRRTPTAKFILSLLIFSLLPLSLLARPFVLVLSQEEFKDAPSDEASAVDPESAEWDEFGDSDAGKSEEELDPGSWRQIFEPDSTFSTTAADPSTELEALYYSGVGKMMSAVTSAEVRLMEEATGEIEAAAESGYPAAQSVLGFLWGMGLLRERSKSKAFLYHHFASEGGNMQSKMALAYAYTRQDMFEKAVKLYAELAEVAVNSFLISKDSPVIEPVRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAGAMYKVGLFYYFGLRGLRRDHTKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKALEWLTLASKQHLYSAYNGMGYLYVKGYGVDKKNYTKAKEYFEKAADNDEVGGHYNLGVMYLKGIGVKRDVKLACKFFIVAANHGQPKAFYQLAKIFHIGVGFKKNIPLATALYKLVAERGPWSSLSRWALESYLKGDVGKAFMLYSRMAEMGYEVAQSNAAWILDKYGERNMCMGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTIRDYERAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDEALEHDPAAKLPVTLALASLWVRKNYDGSFLVHVIDSLPEVYPKLEAWVEEVLLEEGNATILTLFACLLTVLYLRERQRRQVVAVPGEVAQPNHPNDLDVPALI 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0701 684 SUPERFAMILY HCP-like 345 475 - -
Lal23g0701 684 MobiDBLite consensus disorder prediction 50 65 - -
Lal23g0701 684 SUPERFAMILY HCP-like 121 201 - -
Lal23g0701 684 SUPERFAMILY HCP-like 235 361 - -
Lal23g0701 684 SUPERFAMILY HCP-like 447 588 - -
Lal23g0701 684 MobiDBLite consensus disorder prediction 41 72 - -
Lal23g0701 684 Gene3D Tetratricopeptide repeat domain 90 214 IPR011990 GO:0005515
Lal23g0701 684 Gene3D Tetratricopeptide repeat domain 231 605 IPR011990 GO:0005515
Lal23g0701 684 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 5 665 - -
Lal23g0701 684 SMART sel1 136 171 IPR006597 -
Lal23g0701 684 SMART sel1 291 326 IPR006597 -
Lal23g0701 684 SMART sel1 364 399 IPR006597 -
Lal23g0701 684 SMART sel1 552 587 IPR006597 -
Lal23g0701 684 SMART sel1 516 551 IPR006597 -
Lal23g0701 684 SMART sel1 254 290 IPR006597 -
Lal23g0701 684 SMART sel1 400 435 IPR006597 -
Lal23g0701 684 SMART sel1 327 363 IPR006597 -
Lal23g0701 684 Pfam Sel1 repeat 518 540 IPR006597 -
Lal23g0701 684 Pfam Sel1 repeat 136 171 IPR006597 -
Lal23g0701 684 Pfam Sel1 repeat 292 324 IPR006597 -
Lal23g0701 684 Pfam Sel1 repeat 367 398 IPR006597 -
Lal23g0701 684 Pfam Sel1 repeat 328 362 IPR006597 -
Lal23g0701 684 Pfam Sel1 repeat 255 289 IPR006597 -
Lal23g0701 684 Pfam Sel1 repeat 449 467 IPR006597 -
Lal23g0701 684 Pfam Sel1 repeat 552 586 IPR006597 -
Lal23g0701 684 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 5 665 IPR044623 GO:0030433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0701 Lal-Chr23 9679137 9687177 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0701 K14026 - gmx:732556 1124.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0701 23 9679137 9687177 Lal23g0701 23 9679137 9687177 ECH
Lal16g0934 16 6199794 6205023 Lal23g0701 23 9679137 9687177 LSH