Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0934 ATGCGACATCGATCTCCGACCACTAAGTTCGCACTCTCTCTCCTCATTTTCTCTCTCCTCCCTCTCTCTCTCCTCGCTCGTCCCCTCGTTCTCGTCTTCTCTCAAGAAGATTTCAAGGACGCTCCCTCCGACGAAGCCTCCGCCGTCGATCCCGACTCCGCAGAGTGGGACGAGTTCGGCGAATCCGATGCCGGAAAGTCAGAGGATGAGCTCGACCCGGGGTCATGGCGCCAAATTTTCGAACCCGATTCAACTTTCTCCGCCACCGCCGCCGAACCATCAATGGAAGTGGACGCTCTGTACTACTCCGGCGTCGGGAAGATCATGTCTGCGGTGACTTCGGCGGACGTTAAGTTGATGGAGGAGGCTTGCGGAGAGATTGAAGCGGCGGCTGAGTCGGGTTACCCTGCGGCGCAATCGATGCTAGGGTTTTTGTGGAGAATGGGGATTTTGAGAGAGAGAAGCAAAGCTAAGGCGTTTCTGTATCACCATTTTGCTGCAGAAGGTGGAAACATGCAATCGAAGATGGCATTGGCTTATACCTATAAGCGTCAAGATATGTTTGAGAAATCAGTTAAGCTTTATGCTGAATTAGCAGAAGTAGCTGTGAATAGTTTTTTGATGACCAAGGACTCCCCCGTCATCGAACCGGTTAGGCTCCACAATGGACCTGAAGAGAATAAAGAAGCTCTGAGTAAATCTAAAGGAGAAGAGGATGAGGACTTTCAGATACTGGAGTATCAGGCTCATAAAGGGAATGCCGATGCAATGTACAAAGTTGGCCTCTTTTACTACTTCGGGCTTCGAGGATTGAGGCGCGATCATTCCAAAGCACTCTCATGGTTCTTGAAGGCTGTGGAGAAGGGAGAGCCGCGGTCCATGGAACTTCTTGGAGAGATATATGCTAGAGGAGCAGGTGTCGAAAGAAACTACACTAAAGCCCTTGAATGGCTTACACTTGCATCGAAACAGCAACTGTATTCAGCTTATAATGGGATGGGGTATTTATATGTTAAAGGTTATGGAGTCGAGAAGAAAAATTACACAAAAGCAAAAGAGTATTTTGAAAAGGCTGCCGGTAATGATGAGGTTGGTGGGCACTATAATTTGGGTGTCATGTATCTCAAGGGGATTGGAGTGAAAAGAGATGTGAAGTTGGCATGTAAGTTCTTGATAATAGCTGCTAACCATGGTCAACCGAAGGCATTCTACCAGCTGGCAAAGATTTTCCATATTGGTGCCGGGTTCAAGAAAAATATCCCCTTGGCTATTTCACTGTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCACTAGAATCATACTTAAAAGGAGACGTTGGCAAGGCATTTATGTTGTATTCTAGAATGGCTGAGATGGGCTATGAGGTGGCACAAAGTAATGCTGCATGGATTCTTGACAAATATGGGGAACATAGCATTTGCATGGGTGAATCTGGAGTTTGCACTGATGCGGAAAGGCATCAGCGTGCACATTCTCTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTCATTGGAGATGCGTATTACTATGGCCGGGGTACTATCAGGGATTATGAGCGAGCTGCTGAGGCTTACATGCATGCCAAATCACAATCTAATGCACAAGCCATGTTCAATCTTGGATACATGCATGAGCATGGCCAAGGACTTCCACTTGACCTTCATCTTGCCAAGCGTTACTATGATGAAGCCCTAAACCATGATTCAGCAGCAAAGTTGCCAGTCACACTGGCCCTCACAAGCTTGTGGGTTCGTATGAACTATGATGGCAGTTTCTTGGTGCATGTGATTGATTCATTGCCAGAATTCCACTCTAAGTTACAAGCATGGGTAGAGGATGTGCTTTTAGAGGAGGGAAATGCCACAATTCTCACCCTCTTTGTATGCCTTCTAACAGTTCTATATCTCAGGGAAAGACAGCGACGACAACCTGTTGCGCCTGTAGAGGTAGCTCAGCCAAATCACCTTAACGAGCTTGGTGTGCCTGCACCCATTTAG 2052 0.4737 MRHRSPTTKFALSLLIFSLLPLSLLARPLVLVFSQEDFKDAPSDEASAVDPDSAEWDEFGESDAGKSEDELDPGSWRQIFEPDSTFSATAAEPSMEVDALYYSGVGKIMSAVTSADVKLMEEACGEIEAAAESGYPAAQSMLGFLWRMGILRERSKAKAFLYHHFAAEGGNMQSKMALAYTYKRQDMFEKSVKLYAELAEVAVNSFLMTKDSPVIEPVRLHNGPEENKEALSKSKGEEDEDFQILEYQAHKGNADAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKALEWLTLASKQQLYSAYNGMGYLYVKGYGVEKKNYTKAKEYFEKAAGNDEVGGHYNLGVMYLKGIGVKRDVKLACKFLIIAANHGQPKAFYQLAKIFHIGAGFKKNIPLAISLYKLVAERGPWSSLSRWALESYLKGDVGKAFMLYSRMAEMGYEVAQSNAAWILDKYGEHSICMGESGVCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTIRDYERAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDEALNHDSAAKLPVTLALTSLWVRMNYDGSFLVHVIDSLPEFHSKLQAWVEDVLLEEGNATILTLFVCLLTVLYLRERQRRQPVAPVEVAQPNHLNELGVPAPI 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0934 683 MobiDBLite consensus disorder prediction 50 65 - -
Lal16g0934 683 Pfam Sel1 repeat 449 467 IPR006597 -
Lal16g0934 683 Pfam Sel1 repeat 552 586 IPR006597 -
Lal16g0934 683 Pfam Sel1 repeat 367 398 IPR006597 -
Lal16g0934 683 Pfam Sel1 repeat 404 434 IPR006597 -
Lal16g0934 683 Pfam Sel1 repeat 292 324 IPR006597 -
Lal16g0934 683 Pfam Sel1 repeat 254 289 IPR006597 -
Lal16g0934 683 Pfam Sel1 repeat 136 171 IPR006597 -
Lal16g0934 683 Pfam Sel1 repeat 328 359 IPR006597 -
Lal16g0934 683 Pfam Sel1 repeat 518 540 IPR006597 -
Lal16g0934 683 Gene3D Tetratricopeptide repeat domain 218 329 IPR011990 GO:0005515
Lal16g0934 683 SUPERFAMILY HCP-like 345 475 - -
Lal16g0934 683 SUPERFAMILY HCP-like 447 587 - -
Lal16g0934 683 SMART sel1 291 326 IPR006597 -
Lal16g0934 683 SMART sel1 136 171 IPR006597 -
Lal16g0934 683 SMART sel1 327 363 IPR006597 -
Lal16g0934 683 SMART sel1 364 399 IPR006597 -
Lal16g0934 683 SMART sel1 552 587 IPR006597 -
Lal16g0934 683 SMART sel1 516 551 IPR006597 -
Lal16g0934 683 SMART sel1 400 435 IPR006597 -
Lal16g0934 683 SMART sel1 254 290 IPR006597 -
Lal16g0934 683 Gene3D Tetratricopeptide repeat domain 330 440 IPR011990 GO:0005515
Lal16g0934 683 Gene3D Tetratricopeptide repeat domain 94 212 IPR011990 GO:0005515
Lal16g0934 683 MobiDBLite consensus disorder prediction 42 73 - -
Lal16g0934 683 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 6 666 - -
Lal16g0934 683 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 6 666 IPR044623 GO:0030433
Lal16g0934 683 SUPERFAMILY HCP-like 100 201 - -
Lal16g0934 683 Gene3D Tetratricopeptide repeat domain 441 599 IPR011990 GO:0005515
Lal16g0934 683 SUPERFAMILY HCP-like 235 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0934 Lal-Chr16 6199794 6205023 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0934 K14026 - gmx:732556 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0934 16 6199794 6205023 Lal16g0934 16 6199794 6205023 ECH
Lal16g0934 16 6199794 6205023 Lal23g0701 23 9679137 9687177 LSH