Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0688 ATGGCTGAAACCTTAGTTCTCCGCGGCACATTGCGGGCCCACACCGACGATATTACCGCTATCGCCACCCCAATTGACAATTCCGACATGATCGTAACCGCTTCTCGCGACAAGTCTCTAATCGTATGGCACTTAACCAAGGAGGACAAGACTTACGGCGTTCCCCGCCGCCGTCTCACCGGCCACTCCCATTTCGTTCAAGATGTCGTTCTTTCCTCCGACGGCCAGTTCGCTCTCTCCGGCTCATGGGACTCTGAGCTCCGTCTCTGGGACCTCGCCGCCGGAACTTCACGTCGCTTCGTCGGTCACACCAAAGATGTTCTCTCCGTCGCGTTCTCCGTTGATAACCGCCAGATTGTGTCAGCGTCTCGCGACCGTAGCATCAAGCTTTGGAACACTCTCGGTGAATGCAAATACACGATTCAGGATTCCGATGGTCACTCTGATTGGGTTTCGTGTGTTAAGTTCAGCCCTAACACGCTTCAGCCGACGATTGTTTCGGCGTCGTGGGATAGGACTGTGAAGGTTTGGAATTTGACGAATTGTAAGCTGAAGAACACGCTTGCTGGTCATAGTGGTTATGTGAACACTGTTGCGGTTTCGCCAGATGGTTCGCTTTGCGCGAGTGGTGGGAAAGATGGGGTTATTTTGCTGTGGGATTTGGCTGAGGGGAAGAAGCTTTATTCGCTTGAAGCGGGTTCCATTATTCATTCTCTGTGTTTTAGTCCTAACAGGTATTGGTTATGTGCTGCTACAGAATCAAGTATTAAGATCTGGGATTTGGAGAGTAAGAGCATTGTTGAGGATTTGAAGGTTGATCTCAAATCTGAGGCTGAGGCTAACACTGGCACTGGTAACGCCAACAAGAAGAAGGATATCTACTCTACAAGCTTGGCCTGGAGTGTTGATGGAAGCACTTTGTTTAGCGGCTACACTGATGGTGTGGTCAGAGTGTGGGGAATTGGTCGTTATTAG 975 0.5036 MAETLVLRGTLRAHTDDITAIATPIDNSDMIVTASRDKSLIVWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDSELRLWDLAAGTSRRFVGHTKDVLSVAFSVDNRQIVSASRDRSIKLWNTLGECKYTIQDSDGHSDWVSCVKFSPNTLQPTIVSASWDRTVKVWNLTNCKLKNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLEAGSIIHSLCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKSEAEANTGTGNANKKKDIYSTSLAWSVDGSTLFSGYTDGVVRVWGIGRY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0688 324 Gene3D - 4 324 IPR015943 GO:0005515
Lal23g0688 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 225 - -
Lal23g0688 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 324 - -
Lal23g0688 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 100 132 IPR001680 GO:0005515
Lal23g0688 324 SMART WD40_4 52 91 IPR001680 GO:0005515
Lal23g0688 324 SMART WD40_4 4 44 IPR001680 GO:0005515
Lal23g0688 324 SMART WD40_4 287 320 IPR001680 GO:0005515
Lal23g0688 324 SMART WD40_4 134 178 IPR001680 GO:0005515
Lal23g0688 324 SMART WD40_4 181 220 IPR001680 GO:0005515
Lal23g0688 324 SMART WD40_4 223 260 IPR001680 GO:0005515
Lal23g0688 324 SMART WD40_4 93 132 IPR001680 GO:0005515
Lal23g0688 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 100 132 - -
Lal23g0688 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 229 IPR001680 GO:0005515
Lal23g0688 324 ProSitePatterns Trp-Asp (WD) repeats signature. 207 221 IPR019775 -
Lal23g0688 324 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN 3 324 - -
Lal23g0688 324 Pfam WD domain, G-beta repeat 225 260 IPR001680 GO:0005515
Lal23g0688 324 Pfam WD domain, G-beta repeat 185 220 IPR001680 GO:0005515
Lal23g0688 324 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Lal23g0688 324 Pfam WD domain, G-beta repeat 291 319 IPR001680 GO:0005515
Lal23g0688 324 Pfam WD domain, G-beta repeat 98 132 IPR001680 GO:0005515
Lal23g0688 324 Pfam WD domain, G-beta repeat 137 178 IPR001680 GO:0005515
Lal23g0688 324 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Lal23g0688 324 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 3 324 IPR045223 GO:0015935|GO:0043022
Lal23g0688 324 ProSitePatterns Trp-Asp (WD) repeats signature. 165 179 IPR019775 -
Lal23g0688 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 92 - -
Lal23g0688 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Lal23g0688 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 324 IPR001680 GO:0005515
Lal23g0688 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Lal23g0688 324 PRINTS G protein beta WD-40 repeat signature 119 133 IPR020472 -
Lal23g0688 324 PRINTS G protein beta WD-40 repeat signature 165 179 IPR020472 -
Lal23g0688 324 PRINTS G protein beta WD-40 repeat signature 207 221 IPR020472 -
Lal23g0688 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Lal23g0688 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 181 - -
Lal23g0688 324 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Lal23g0688 324 CDD WD40 7 319 - -
Lal23g0688 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 187 IPR001680 GO:0005515
Lal23g0688 324 SUPERFAMILY WD40 repeat-like 4 321 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0688 Lal-Chr23 9582024 9584446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0688 7 259 Acyl Lipid Metabolism Gene Families AT3G18860 31.154 1.02e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0688 K14753 - gmx:100778205 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0688 23 9582024 9584446 Lal23g0688 23 9582024 9584446 ECH
Lal16g0954 16 6336134 6341752 Lal23g0688 23 9582024 9584446 LSH