Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0954 ATGGCAGAAACTTTAGTTCTCCGAGGTACCCTGCGGGCCCACACCGACGCCGTCACCGCCATCGCAACCCCAATTGACAACTCCGACATGATCGTAACCGCATCTCGCGACAAGTCCCTTATCGTCTGGCACCTCACCAAGGACGACAAGTCCTACGGTGTCCCCCGCCGTCGCCTCACCGGCCACTCCCACTTCGTCCAGGACGTTGTCCTCTCCTCCGACGGCCAATTCGCCCTCTCCGGCTCCTGGGACTCCGAACTTCGCCTGTGGGACCTCGCCGCCGGTACCCCTTCCCGCCGCTTCGTTGGCCACACCAAAGACGTTCTCTCCGTCGCTTTCTCCATTGATAACCGCCAGATCGTCTCCGCCTCCCGCGACCGCACCATCAAGCTATGGAACACTCTCGGTGAATGTAAATATACAATTCAAGATTCCGATGCTCACTCCGATTGGGTTTCATGCGTTAGGTTTAGCCCTAACACACTTCAACCAACGATCGTTTCGGCCTCGTGGGACCGGAACGTGAAGGTTTGGAATTTAACCAATTGTAAGCTGAAGAACACTCTTTCCGGCCATGGCGGTTATGTGAACACTGTTGCGGTTTCGCCCGATGGTTCGCTTTGTGCTAGTGGTGGAAAAGATGGAGTTGTTTTGCTATGGGATTTGGCTGAAGGGAAGAAGCTTTATTCGCTCGATGCGAATTCGATTATTCATTCTTTGTGTTTTAGCCCCAATAGGTATTGGCTCTGTGCTGCTACAGAACAGGGTATTAAGATATGGGATTTGGAGAGTAAGAGAGTTGTTGAGGATTTGAAGGTTGATCTTAAGTCTGAGGCTGATGCTGGCACTGGCACTGGTAACCGCAACCACAATAAGGTTATCTACTGTACAAGCTTGGCCTGGAGTGTAGATGGAAGCACTTTGTTTAGTGGCTACACTGATGGTGTGGTCAGAGTGTGGGGAATTGGTCGCTATTAG 978 0.5225 MAETLVLRGTLRAHTDAVTAIATPIDNSDMIVTASRDKSLIVWHLTKDDKSYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDSELRLWDLAAGTPSRRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDSDAHSDWVSCVRFSPNTLQPTIVSASWDRNVKVWNLTNCKLKNTLSGHGGYVNTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLDANSIIHSLCFSPNRYWLCAATEQGIKIWDLESKRVVEDLKVDLKSEADAGTGTGNRNHNKVIYCTSLAWSVDGSTLFSGYTDGVVRVWGIGRY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0954 325 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Lal16g0954 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Lal16g0954 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Lal16g0954 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Lal16g0954 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Lal16g0954 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Lal16g0954 325 SMART WD40_4 286 321 IPR001680 GO:0005515
Lal16g0954 325 SMART WD40_4 4 44 IPR001680 GO:0005515
Lal16g0954 325 SMART WD40_4 135 179 IPR001680 GO:0005515
Lal16g0954 325 SMART WD40_4 224 261 IPR001680 GO:0005515
Lal16g0954 325 SMART WD40_4 52 91 IPR001680 GO:0005515
Lal16g0954 325 SMART WD40_4 94 133 IPR001680 GO:0005515
Lal16g0954 325 SMART WD40_4 182 221 IPR001680 GO:0005515
Lal16g0954 325 SUPERFAMILY WD40 repeat-like 4 320 IPR036322 GO:0005515
Lal16g0954 325 PANTHER BNAA06G12310D PROTEIN 1 325 - -
Lal16g0954 325 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Lal16g0954 325 Gene3D - 4 325 IPR015943 GO:0005515
Lal16g0954 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Lal16g0954 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Lal16g0954 325 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Lal16g0954 325 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Lal16g0954 325 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Lal16g0954 325 CDD WD40 7 320 - -
Lal16g0954 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 289 325 - -
Lal16g0954 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 325 IPR001680 GO:0005515
Lal16g0954 325 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 325 IPR045223 GO:0015935|GO:0043022
Lal16g0954 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 92 - -
Lal16g0954 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Lal16g0954 325 Pfam WD domain, G-beta repeat 289 320 IPR001680 GO:0005515
Lal16g0954 325 Pfam WD domain, G-beta repeat 139 179 IPR001680 GO:0005515
Lal16g0954 325 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Lal16g0954 325 Pfam WD domain, G-beta repeat 96 133 IPR001680 GO:0005515
Lal16g0954 325 Pfam WD domain, G-beta repeat 185 221 IPR001680 GO:0005515
Lal16g0954 325 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
Lal16g0954 325 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Lal16g0954 325 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Lal16g0954 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0954 Lal-Chr16 6336134 6341752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0954 7 322 Acyl Lipid Metabolism Gene Families AT3G18860 29.503 7.33e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0954 K14753 - gmx:100778205 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0954 16 6336134 6341752 Lal16g0954 16 6336134 6341752 ECH
Lal16g0954 16 6336134 6341752 Lal23g0688 23 9582024 9584446 LSH