Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0457 ATGATGGCCTCAAAGGTTTGCAAAGCCGCAAAGTCCCTTCTCTCTGCTTCCAAGGCCTCTCGTTTTTACTCTGAAGGAGGACATGCCGTTGCAGCAGCTGCAGCAGTTTCATTGACAAGCAAAGTGCCTCTTTTCGCTTCAAATTATGGAAGGGCCGGTAATGGAAGTGGATCCAGAACATGGATTTCGGGAGCTCTTGCTCTTCCCGCAGCAGCTTACATGCTTCAAGATCAAGAGGTGCATGCTGCTGAGTTGGAGCGCACTTTCATTGCCATTAAGCCTGATGGAGTGCAAAGAGGGCTGATTTCAGAGATTATATCCCGTTTTGAGCGGAAAGGGTACAAGCTTGTGGGAATTAAAGTGTTGATTCCTTCGAAGGAATTTGCCGAAAGGCATTATCATGACTTGAAAGAGAGGCCTTTTTTCAATGGGCTGTGTGATTTCCTAAGCTCCGGCCCTGTTATTGCAATGGTGTGGGAAGGACAAGGAGTTATTACATACGGCCGCAAACTAATTGGAGCTACAGATCCACAGAAATCAGAGCCTGGAACTATTAGGGGTGATCTTGCTGTTGTTGTTGGAAGAAATATCATCCATGGAAGCGATGGTCCAGAGACGGCAAAGGACGAGATTAACTTGTGGTTTAAGCCAGAGGAGTTAGTTAGCTTCACTAGCAATGCTGAGAAGTGGGTTTATGGTGTCAACTGA 708 0.4661 MMASKVCKAAKSLLSASKASRFYSEGGHAVAAAAAVSLTSKVPLFASNYGRAGNGSGSRTWISGALALPAAAYMLQDQEVHAAELERTFIAIKPDGVQRGLISEIISRFERKGYKLVGIKVLIPSKEFAERHYHDLKERPFFNGLCDFLSSGPVIAMVWEGQGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVSFTSNAEKWVYGVN 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0457 235 ProSitePatterns Nucleoside diphosphate kinases active site. 196 204 IPR023005 -
Lal23g0457 235 Hamap Nucleoside diphosphate kinase [ndk]. 85 220 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal23g0457 235 CDD NDPk_I 86 215 - -
Lal23g0457 235 Pfam Nucleoside diphosphate kinase 86 219 IPR034907 -
Lal23g0457 235 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE-RELATED 6 235 - -
Lal23g0457 235 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 6 235 - -
Lal23g0457 235 SUPERFAMILY Nucleoside diphosphate kinase, NDK 85 232 IPR036850 -
Lal23g0457 235 SMART ndk_5 85 222 IPR034907 -
Lal23g0457 235 Gene3D - 81 235 IPR036850 -
Lal23g0457 235 PRINTS Nucleoside diphosphate kinase signature 88 110 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal23g0457 235 PRINTS Nucleoside diphosphate kinase signature 132 151 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal23g0457 235 PRINTS Nucleoside diphosphate kinase signature 152 169 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal23g0457 235 PRINTS Nucleoside diphosphate kinase signature 173 189 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal23g0457 235 PRINTS Nucleoside diphosphate kinase signature 196 215 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0457 Lal-Chr23 7289390 7293571 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0457 K00940 - pmum:103337781 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1154 16 7871917 7874593 Lal23g0457 23 7289390 7293571 LSH