Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1154 ATGATGATTTCTTCAAAGGTTTCCAAACTCGCCAGATCCCTTCTCTCTGCTTCCAAAGCCTCCCCCTCTCGTTTTTATTATGAAGGAGGACGCGCCATTGCAGCTGCTGCATCAGTTTCATTGACCAGCAAAGCGCCTCTATTCGCTTCAAATTATGGCAGGGCTGGTTCTGAAAGTGGATCCAGAACATGGATTGCAGGAGCTCTTGCTCTTCCCGCTGCAGCTTACATGCTTCAAGATCAAGAGGTGCATGCTGCTGAGTTTGAACGCACTTTCATTGCCGTTAAGCCTGATGGAGTGCAGAGAGGGCTGATTTCAGAGATTATATCCCGTTTTGAGCGCAAAGGGTACAAGCTTGTGGGAATTAAAGTGGTGGTTCCTACAAAGGAATTTGCCGGAAAGCATTATCATGCCCTTAAAGACAAACCCTTCTTCAATGGATTGTCTGAATTCCTTAGCTCTGGCCCTGTTGTTGCAATGGTGTGGGAAGGAGAAGGAGTTATTACATATGGCCGCAAATTAATTGGAGCCACAGATCCACAGAAATCAGAGCCTGGAACTATTAGGGGTGATTTGGCTGTTGTTGTTGGAAGAAATATCATTCATGGAAGTGATGGTCCAGAAACTGCCAAGGATGAGATTAACTTGTGGTTTAAGCCAGAGGAGTTGGTTAGCTTCACTAGCAATGCTGAGAAGTGGATTTATGGTGTCAACTAG 717 0.4561 MMISSKVSKLARSLLSASKASPSRFYYEGGRAIAAAASVSLTSKAPLFASNYGRAGSESGSRTWIAGALALPAAAYMLQDQEVHAAEFERTFIAVKPDGVQRGLISEIISRFERKGYKLVGIKVVVPTKEFAGKHYHALKDKPFFNGLSEFLSSGPVVAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVSFTSNAEKWIYGVN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1154 238 Pfam Nucleoside diphosphate kinase 89 222 IPR034907 -
Lal16g1154 238 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 4 238 - -
Lal16g1154 238 Gene3D - 87 238 IPR036850 -
Lal16g1154 238 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE-RELATED 4 238 - -
Lal16g1154 238 PRINTS Nucleoside diphosphate kinase signature 91 113 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal16g1154 238 PRINTS Nucleoside diphosphate kinase signature 135 154 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal16g1154 238 PRINTS Nucleoside diphosphate kinase signature 155 172 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal16g1154 238 PRINTS Nucleoside diphosphate kinase signature 176 192 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal16g1154 238 PRINTS Nucleoside diphosphate kinase signature 199 218 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal16g1154 238 ProSitePatterns Nucleoside diphosphate kinases active site. 199 207 IPR023005 -
Lal16g1154 238 Hamap Nucleoside diphosphate kinase [ndk]. 88 223 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal16g1154 238 SUPERFAMILY Nucleoside diphosphate kinase, NDK 88 235 IPR036850 -
Lal16g1154 238 SMART ndk_5 88 225 IPR034907 -
Lal16g1154 238 CDD NDPk_I 89 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1154 Lal-Chr16 7871917 7874593 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1154 K00940 - pmum:103337781 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1154 16 7871917 7874593 Lal16g1154 16 7871917 7874593 ECH
Lal16g1154 16 7871917 7874593 Lal23g0457 23 7289390 7293571 LSH