Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0455 ATGGAGAAACTTGTGAAACTCATTACCCTGTTCCCTATGCTTCTACTTGTGTTCTCACCTTTTGCTTTATCCGGCCATGACTATGGCCAAGCTTTAAGTAACAGCCTTCTATTCTTCGAAGCTCAAAGATCTGGTTACCTTCCATCTAACCAGAGAGTAAATTGGAGAGCTCATTCTGGTCTCAACGATGGCAAAGCTAGCGGGGTAGATCTAGTTGGAGGGTACTATGATGCAGGGGACAATGTAAAATTTGGTCTACCCATGGCATTCACGGTTACAATGATGTCATGGAGCATCATAGAATATGGGAAACAAATGGCTTCAAGCGGTGAGCTTGGTCATGCCATGGAAGCTGTTAAGTGGGGCACTGACTACTTCATTAAAACTCACCCTCTCCCTAATGTTCTCTATGGAGAGGTGGGAGATGGTAATAGTGACCATTACTGTTGGCAAAGGCCAGAGGACATGACTACTGACCGTCATGCTTATAAAATAGATCCAAGTAATCCAGGGTCGGACCTTGCAGGAGAAACTGCCGCCGCTATGGCCGCTGCCTCCATAGTTTTCCGGCAGTCTAACTCTTCCTATTCGGCCGAACTCCTCGGCCATGCTTACCAGTTATTTGATTTTGCGGATAAATACAGAGGAAAATATGACAGCAGCATAACTGTTGCCCACAAGTATTACAGATCTATCAGTGGCTACAATGATGAGTTGCTGTGGGCTGCTGCATGGTTGTATCAAGCATCTAACAATGAGTATTACTTGGATTACCTTGGGAGAAATGGTGACTCCATGGGTGGAACTCTATGGGGAATGACTGAATTTGGTTGGGATGTCAAGTATGCTGGTGTCCAAACCTTAGTAGCCAAGTTCCTTATGCAAGGAAAAGCTGGTCATTATGCACCAGTCTTTGAGAGGTATCAGCAGAAGGCTGAGTATTTTATGTGTTCCTGCCTTGGAAAGGGTACTCATAATGTTCGAAAAACTCCCGGTGGCCTTATATTCTCCCAGAGATGGAACAACATGCAGTTTGTCACAAGTGCTTCCTTTTTAGCAACTGTTTACTCTGATTATCTTTCGTCCGCTGGTAAAAACCTGATATGCAGTTCAGGCAATGTCGCTGCTGCTGAACTTCTCTCATTCGTAATGTCTCAGGTGGATTACATTCTTGGCGACAACCCAAGATCCACAAGTTACATGGTGGGATATGGAAGCAACTTCCCTCAAAGAGTTCACCACAGAGGTTCATCCATTGTGTCTATCAAGGTTAACCCTTCCTTTGTTAGCTGTCGTGGCGGTTATGCTACTTGGTTCAGCAGCAAAAACAGCGACCCTAATCTACTTACTGGTGCTATTGTTGGTGGACCTGATGCAAATGATAACTTCGCCGATGAAAGAAATAATTATGAGCAAACTGAGCCAGCAACATACAACAGTGCTCCTCTTATTGGTATTCTAGCACGGCTAAATATGGGTCATGACGGCTCTAATCAGCTCCTTCCAGTTGTTGTTCCTGCTCATATGCCTGTTCTGACCAAGCCCCAACCAACCCCAAAACCAAATATATCTCCATCTCCAGCCTCATCATGGTCGGATCCAATTTCCATTGAACAGAAAATGACTTCCTCATGGGTTTACAATGGAAGAACGTATTATAGATACTCAACAGTTGTGACTAACAAATCTAGCAAGGCTATCAAGTATCTTAATCTTTCAATATCCAAACTTTATGGTCCAATTTGGGGTCTCACAAAATCTGGTGATTCATACACTTTCTCTTCATGGCTCAGCTCATTAGCAGCAGGTAAAAGCCTCGAATTTGTCTACATCCATTCCGCTTCTCCAGTGGATGTCTTTGTCGCGAACTACTACTTGGCCTGA 1884 0.4416 MEKLVKLITLFPMLLLVFSPFALSGHDYGQALSNSLLFFEAQRSGYLPSNQRVNWRAHSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMASSGELGHAMEAVKWGTDYFIKTHPLPNVLYGEVGDGNSDHYCWQRPEDMTTDRHAYKIDPSNPGSDLAGETAAAMAAASIVFRQSNSSYSAELLGHAYQLFDFADKYRGKYDSSITVAHKYYRSISGYNDELLWAAAWLYQASNNEYYLDYLGRNGDSMGGTLWGMTEFGWDVKYAGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKGTHNVRKTPGGLIFSQRWNNMQFVTSASFLATVYSDYLSSAGKNLICSSGNVAAAELLSFVMSQVDYILGDNPRSTSYMVGYGSNFPQRVHHRGSSIVSIKVNPSFVSCRGGYATWFSSKNSDPNLLTGAIVGGPDANDNFADERNNYEQTEPATYNSAPLIGILARLNMGHDGSNQLLPVVVPAHMPVLTKPQPTPKPNISPSPASSWSDPISIEQKMTSSWVYNGRTYYRYSTVVTNKSSKAIKYLNLSISKLYGPIWGLTKSGDSYTFSSWLSSLAAGKSLEFVYIHSASPVDVFVANYYLA 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0455 627 PANTHER ENDO-1,4-BETA-GLUCANASE 13 593 - -
Lal23g0455 627 Gene3D - 25 493 IPR012341 GO:0005975
Lal23g0455 627 Pfam Glycosyl hydrolase family 9 28 487 IPR001701 GO:0004553|GO:0005975
Lal23g0455 627 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 389 415 IPR018221 -
Lal23g0455 627 SMART CBM49_2 535 615 IPR019028 GO:0030246
Lal23g0455 627 PANTHER ENDOGLUCANASE 13 593 - -
Lal23g0455 627 SUPERFAMILY Six-hairpin glycosidases 24 503 IPR008928 GO:0005975
Lal23g0455 627 Pfam Carbohydrate binding domain CBM49 535 612 IPR019028 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0455 Lal-Chr23 7236997 7251909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0455 20 627 Glycoside Hydrolase AT1G64390 76.645 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0455 K01179 - gmx:732598 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0455 23 7236997 7251909 Lal23g0455 23 7236997 7251909 ECH
Lal16g1156 16 7882645 7888996 Lal23g0455 23 7236997 7251909 LSH