Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0246 CTTAATTCTCCTGAATACCCAGTTGAAGAAATCAACAAAACCAACATGTCTGGACCTCTGTCCCCCAAGACAGCTCTGGAGAAGAGTGACCGCGTCGGTTCTTTAAGAAGGAAGGCAATGAGTTTCAGGAATTCGATAACAAGAAGAAGCAGAAGAAGCAGCAGCAAGGTTATGTCTGTTGAAATCGAGGATATCCGCGATGCGGAGGAGTTGAAGGCTGTTGATGAGTTTCGTCAAGCTCTTGTTTTGGATGAGCTACTCCCTGAAAAGCATGATGATTATCATATGATGCTTAGATTCCTCAAGGCCAGGAAATTTGACATTGAGAAATCCAAGCAAATGTGGTCTGACATGCTCCAATGGAGGAAGGAATTTGGTGTTGACACTATCATAGAGTCTGATGCGGTTCGATGTGGTCCAAATGCGGTGATGCGGTTGCGTTGTGGCCCGATAGGCCGCATTATTGTGATTCGGAGTCACACTGCAATTGCGGACTTTGAATTCAAGGAACTTGATGAAGTGTTGCAATATTATCCCCAAGGAAATCACGGAGTTGATAAAGATGGACGACCTGTGTACATTGAGAGATTGGGTCAAGTTGATGTTACCAAGCTCATGCAAGTCACAACCATGGACCGATATGTTAAATATCATGTCAGAGAGTTTGAGAGGACATTTGATGTGAAGTTTGCAGCTTGTTCCATTGCTGCAAAGATGCACATTGATCAAAGTACGACCATCCTCGATGTTCAGGGAGTGGGTCTTAAGAACTTCAACAAACATGCCAGGGAACTTGTCACACGCCTTCAGAACATTGATGGAAACAATTATCCAGAAACCTTGAATAGGATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAACAGCATAAAATCCTTCCTTGATCCAAAGACCACATCAAAAATCCATGTTCTTAGCAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCTAGTGAGTTGCCAGAGTTTTTAGGAGGTACTTGTACTTGTGCTGATCAAGGAGGCTGCATGCGTTCTGATAAGGGCCCATGGAAGGACCCTGAAATAATAAGAATGGTTCAAAATGGTGAGCACAAATGCTCAAGAAAATGTGAGCTTCCTGTGGTGGAAGAGAAAACAACAACTTCTGAGGAAAATCAGACTTCAAATTTGGAAGCAAATCTCACCTCACAACTATCTTCTGTTTTGGCTGAGGCCCCTGCTACTAAAGCTTACAACTACGACGACTTCGTCCCCGCGGCTGATAAAACTGCTCGGAAAAAGGTTGATGATAATGACATATTTGCATCATCAAAAGTTGGAGTAGAAAGTTACGCGATGGCCGATTCGTGCAAGATTCACGAGAAAGTGAATTCCCAGATTTTCAGTGGTGTAATGGCCTTTGTCATGGGAATAGTCACCATGGTAAGAATGACAAGAAACATGCCAAAGAAGCTCACTGATGCTGACTTCTACTCCAATTCTGCTTACAAGGGTAGCCAGAAAGTCTCTTCTGACCAAATGACTACTAACCCTGCAATTTCGGCTCAAGAATTCATGACCGTGATGAAACGAATGGCCGAGTTGGAAGAGAAAGTGATCAACATGAATCAGAATGCTTGCATGCCACCAGAGAAGGAGGAAATGTTGAATGCTGCTATAACCAGAGCAGATGCATTGGAGCAAGAACTTATGGCAACCAAGAAGGCTTTGGAGGATTCACTTACCAAGCAAGAGGAGTTATCTGCTTATATTGAGAAGAAAAAAAAGAAGAAGAAGTTGGTAATTCGGCTGGTAAGCTCTCAATACAACTGGGTTTTAATTTGA 1842 0.4273 LNSPEYPVEEINKTNMSGPLSPKTALEKSDRVGSLRRKAMSFRNSITRRSRRSSSKVMSVEIEDIRDAEELKAVDEFRQALVLDELLPEKHDDYHMMLRFLKARKFDIEKSKQMWSDMLQWRKEFGVDTIIESDAVRCGPNAVMRLRCGPIGRIIVIRSHTAIADFEFKELDEVLQYYPQGNHGVDKDGRPVYIERLGQVDVTKLMQVTTMDRYVKYHVREFERTFDVKFAACSIAAKMHIDQSTTILDVQGVGLKNFNKHARELVTRLQNIDGNNYPETLNRMFIINAGSGFRMLWNSIKSFLDPKTTSKIHVLSNKYQSKLLEIIDASELPEFLGGTCTCADQGGCMRSDKGPWKDPEIIRMVQNGEHKCSRKCELPVVEEKTTTSEENQTSNLEANLTSQLSSVLAEAPATKAYNYDDFVPAADKTARKKVDDNDIFASSKVGVESYAMADSCKIHEKVNSQIFSGVMAFVMGIVTMVRMTRNMPKKLTDADFYSNSAYKGSQKVSSDQMTTNPAISAQEFMTVMKRMAELEEKVINMNQNACMPPEKEEMLNAAITRADALEQELMATKKALEDSLTKQEELSAYIEKKKKKKKLVIRLVSSQYNWVLI 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0246 613 SMART sec14_4 170 341 IPR001251 -
Lal23g0246 613 SMART CRAL_TRIO_N_2 93 118 IPR011074 -
Lal23g0246 613 CDD SEC14 171 339 IPR001251 -
Lal23g0246 613 Gene3D - 155 377 IPR036865 -
Lal23g0246 613 Gene3D - 57 153 IPR036865 -
Lal23g0246 613 Pfam CRAL/TRIO, N-terminal domain 89 117 IPR011074 -
Lal23g0246 613 Coils Coil 555 586 - -
Lal23g0246 613 SUPERFAMILY CRAL/TRIO domain 170 366 IPR036865 -
Lal23g0246 613 SUPERFAMILY CRAL/TRIO N-terminal domain 67 133 IPR036273 -
Lal23g0246 613 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 17 133 - -
Lal23g0246 613 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 160 599 - -
Lal23g0246 613 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 170 344 IPR001251 -
Lal23g0246 613 Pfam CRAL/TRIO domain 176 338 IPR001251 -
Lal23g0246 613 MobiDBLite consensus disorder prediction 1 22 - -
Lal23g0246 613 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 17 133 - -
Lal23g0246 613 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 160 599 - -
Lal23g0246 613 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0246 Lal-Chr23 2347441 2354228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0246 72 335 Acyl Lipid Metabolism Gene Families AT5G47730 26.937 6.22e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0246 - - lang:109330964 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1845 16 17505158 17512786 Lal23g0246 23 2347441 2354228 LSH