Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0827 ATGAAAGCACAAATCTTTTCAGTTTCACTCCCAGGTTGCAGCATTATTCCTCTGCCCAGATTCTCATCCTATGTCACTCCTCCAAATTTTGCATCTTTTTCATCTACCCATAACCCCTCCAAGAATTTGCCTTATGGGTTTCACAAACCACTCATTTGGGTGCATAAAACAACTGGGTGGAAGAGTAATTGTGGTGGTGGTGGTTCTTTAATTGTTCAGTGTGGTTCCAATGAAGAAAATGATGATGGGTTTTACATTAGAAGATGTGTGGAACTTGCAAGAAAGGGTGTTGGGTACACTAGCCCAAATCCAATGGTGGGGTGTGTTATTGTCAAGGATGGGAAAATTGTTGGTGAAGGGTTCCACCCTAAAGCAGGTCAACCCCATGCTGAGGTGTTTGCTCTGAGAGATGCGGGTGATATGGCGGAGAACGCAACAGCTTATGTGAGCTTGGAACCTTGCAATCATTTTGGAAGGACTCCACCTTGTACCGAAGCTCTAGTTAAAGCCAAAGTGAAAAAGGTTGTTGTTGGTATGGTGGATCCAAATCCCATTGTGGCCTCCAAAGGGGTGGATAGATTGAGAAATGCAGGAATAGAAGTTGTTGTTGGTGTCGAGGAAGATTTGTGCAAGAGACTCAATGAGGCCTATATTCATCGCATGTTAACCGGAAGGCCTTTACTCACTTTGAGATATTCTCTTTCTGTCAATGGTAACCTTTTGGACTTACTTGGGGATCGAGTTACAGATCGTAATGGATACTACTCACGGCTATTACAAGAATATGACGCAGTCGTACTTTCTTCTTCCTTATTCGGTGAAAAGTTATCAATACCTGCATCGCAAGAACCTGGAGCCAATCAACCGTCTATGATTATAATGCATAAAAAACATAGTTCTTCAAATCAAATTCCTCTAGTCATCAATGAAGCTACTGGTAAAGTGATAATTTTCACAGATGATATAACAGCAGCAAATTCAGAAATGACTCAACGTGCAATTGAAACTGTAGCTGTGGATACGATAAATCTGGATGTGATCTTGGATTACTGTAACCGTCAAGGACTGTGCAGTGTTTTATTAGACATGAGGGGAAATTTCAGTGAATTTGAAGATCTTGTTAAGGAGGGTATTAAGAAGAGATACATCAATAAATTTGTGACAGAAATTTTGCCCGTTTGGAATGGACGTGCCGAGACAGATCCTCTAATGCCATTGAAGAGCATAGAGCAAGGAATAAAAGTGGTAAATTTACAGTCCAAGGCCTCAGATCAGAGTATTGTATTTGAGGGATATTTAAAATTTTAA 1308 0.4067 MKAQIFSVSLPGCSIIPLPRFSSYVTPPNFASFSSTHNPSKNLPYGFHKPLIWVHKTTGWKSNCGGGGSLIVQCGSNEENDDGFYIRRCVELARKGVGYTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGDMAENATAYVSLEPCNHFGRTPPCTEALVKAKVKKVVVGMVDPNPIVASKGVDRLRNAGIEVVVGVEEDLCKRLNEAYIHRMLTGRPLLTLRYSLSVNGNLLDLLGDRVTDRNGYYSRLLQEYDAVVLSSSLFGEKLSIPASQEPGANQPSMIIMHKKHSSSNQIPLVINEATGKVIIFTDDITAANSEMTQRAIETVAVDTINLDVILDYCNRQGLCSVLLDMRGNFSEFEDLVKEGIKKRYINKFVTEILPVWNGRAETDPLMPLKSIEQGIKVVNLQSKASDQSIVFEGYLKF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0827 435 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 80 202 IPR002125 -
Lal22g0827 435 PANTHER RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRD, CHLOROPLASTIC 76 270 - -
Lal22g0827 435 SUPERFAMILY Cytidine deaminase-like 82 221 IPR016193 GO:0003824
Lal22g0827 435 Gene3D Cytidine Deaminase, domain 2 72 219 - -
Lal22g0827 435 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 129 167 IPR016192 GO:0008270|GO:0016787
Lal22g0827 435 Gene3D Dihydrofolate Reductase, subunit A 220 432 IPR024072 -
Lal22g0827 435 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 76 270 - -
Lal22g0827 435 TIGRFAM eubact_ribD: riboflavin biosynthesis protein RibD 87 369 IPR004794 GO:0008835|GO:0009231
Lal22g0827 435 CDD Riboflavin_deaminase-reductase 86 198 - -
Lal22g0827 435 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 84 179 IPR002125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0827 Lal-Chr22 6186015 6189393 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0827 K11752 - gmx:100786393 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0827 22 6186015 6189393 Lal22g0827 22 6186015 6189393 ECH
Lal22g0827 22 6186015 6189393 Lal18g0740 18 8693923 8695827 LSH