Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0818 ATGGCAGATGCAAAACAAAGGTATGCTGTTGTTACAGGTTCAAACAAAGGGATAGGGTTCGAGACTGTAAAAGGGTTAGCATCAAATGGAATCAAGGTGGTTCTCACAGCCAGAGATGAGAAGAAGGGTTATGAAGCTGTTCAGAAATTGAGAGAGTCTGGTCTTTCTGACCTTGTGGTTTTTCATAAGCTTGATGTGACTGATCCTGCTACTATTGCATCTTTAGTTGAGTTTGTTAAGGTTCAATTTGGGAGACTTGATATCTTGGTGAACAATGCAGGAATCAATGCATTCAATATGGATGACGTGGTGGAATCAGCAACAATTAACTGGAGGGAACTCAGTGAAACTTATGATATGGCTGAAAAATGCTTAAAAACAAACTACTATGGTGCTAAGGAAACAACTGAAGCATTTCTTCCCCTTCTACATTTATCCAATTCACCTTATATTGTTAATGTTTCCTCCCAAGCAGGACAATTAAAGGTTTCATCTCAAAACCAATTGGTCTTGAGACGAGTAGTCCAACAGTACATACCAAGTGAATGGGCTAAGAGGGTATTGGAAGATAGTGAAAATATCACAGAAGAGAGAATAGAGAAGGTGGTGAAGGAGTTTATGAAAGACTTCAAAGAAGATTCATTAAAAGAGAAAGAGTGGCCAACCTTCTTGTCTGCATATACAATTTCAAAAGCAGCATTGAATAGTTACACAAGGTTTCTAGCTAAGAAGCATGAAAACATAAGCATTAATTGTGTCTGCCCTGGTTTTGTGAAGACAGACATGACCAAAAACACTGGCACCTTACCTGTTGAAGATGGTGCTGCTAGTGTTGTGAGATTAGCTTTGCTTCCTAATGGTTCTTCTTCTGGTAACTTCTTTGCTCGACAAGAAGTAACAGACTTTTGA 909 0.3883 MADAKQRYAVVTGSNKGIGFETVKGLASNGIKVVLTARDEKKGYEAVQKLRESGLSDLVVFHKLDVTDPATIASLVEFVKVQFGRLDILVNNAGINAFNMDDVVESATINWRELSETYDMAEKCLKTNYYGAKETTEAFLPLLHLSNSPYIVNVSSQAGQLKVSSQNQLVLRRVVQQYIPSEWAKRVLEDSENITEERIEKVVKEFMKDFKEDSLKEKEWPTFLSAYTISKAALNSYTRFLAKKHENISINCVCPGFVKTDMTKNTGTLPVEDGAASVVRLALLPNGSSSGNFFARQEVTDF 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0818 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Lal22g0818 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Lal22g0818 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 227 246 IPR002347 -
Lal22g0818 302 CDD carb_red_PTCR-like_SDR_c 7 302 IPR045313 GO:0016616
Lal22g0818 302 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Lal22g0818 302 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Lal22g0818 302 PRINTS Glucose/ribitol dehydrogenase family signature 227 246 IPR002347 -
Lal22g0818 302 PRINTS Glucose/ribitol dehydrogenase family signature 246 263 IPR002347 -
Lal22g0818 302 Pfam short chain dehydrogenase 8 164 IPR002347 -
Lal22g0818 302 Pfam short chain dehydrogenase 223 266 IPR002347 -
Lal22g0818 302 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 285 IPR036291 -
Lal22g0818 302 Gene3D - 2 302 - -
Lal22g0818 302 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 214 242 IPR020904 GO:0016491
Lal22g0818 302 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 4 302 - -
Lal22g0818 302 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0818 Lal-Chr22 6118713 6122593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0818 9 184 Miscellaneous Gene Families AT2G29150 30.556 1.47e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0818 K15095 - gmx:111064653 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0818 22 6118713 6122593 Lal22g0818 22 6118713 6122593 ECH
Lal6g0934 6 6502005 6507012 Lal22g0818 22 6118713 6122593 LSH
Lal22g0818 22 6118713 6122593 Lal6g0934 6 6502005 6507012 PCT