Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0580 ATGACTAGGAGAGGAGTCAGTGTCCCAATTGGAACTTGGTGTGAGAACACAGAAGAATTACAGTCATCAACTCAAGCTTCTAATGAGCCCAAGTGTGAACAACCAAACAATCACACAACTGATGCTCCTGTGACAGACTCAGGTTCTGCATCTGCCTCAAGCAACGATAGCAAAAAGGTTTCACGGCAGGACATTGAGCTTGTCCAGAATTTAATCGAAAGGTGCCTACAATTATATATGAACAAAGATGAAGTGGTTAAAACACTACTGACTCGGGCAAAGATAGATCCTGGATTTACAACTCTTGTATGGCAGAAGCTGGAAGAAGAGAATGATGATTTCTTCAGGGCCTACTATATCAGGCTAAAATTGAAAAAGCAAATACTTTTATTCAATCATTTGCTTGAGCATCAATATCATTTGATGAAGTGTCCCATGCCCGCTAAGGTTCCATTGGCTCCTATGCAGAATGGAATGCATCCGATGCCTGTCAACAACCTACCTATGGGATACCCAGTATTACAGCAGCAACCCATGTCAGCAGCAGGTCAGCCTCATATTGACTCCATGGGTTGTGGTATATCAATGGGTCACATGGCTAATGGAGTCCCTGCACCTACCAATTTTCATCCCATTCGGATGAGTTCTGGAAATGATATGGTGATGGACCACGGTGCTCCAGATATGGCTCATATTATGTCACCAATGTCAGATATGCCAGTGAGTCCGACATCAGTAGCACCCAGTGGCCATTTCCCCTTCACTGCATCAGAAATACCAGGAATGGGGGCAGACGTATCAACTCTTGAAGCAGCATTTACATCTGATGTGGTAAGTTCAGTAGGACTACAGCTTGCACCGGATGGCAGCAATGGCATTTCTAGATCGCTAGATCAAATTCCGTGGAATTTCAGCCTATCTGATCTAGCAGCAGATTTGCCAAACTTAGGAGATCTAGGAGCTCTGGGAAATTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACATTTTACTTGAATCTCCCGATCAACATGATATAGTGGATGACTTCTTTGTTAATTCAGACCCCCCATGCTCCCAATCAGATGAGGAGAAATCTTAA 1104 0.4366 MTRRGVSVPIGTWCENTEELQSSTQASNEPKCEQPNNHTTDAPVTDSGSASASSNDSKKVSRQDIELVQNLIERCLQLYMNKDEVVKTLLTRAKIDPGFTTLVWQKLEEENDDFFRAYYIRLKLKKQILLFNHLLEHQYHLMKCPMPAKVPLAPMQNGMHPMPVNNLPMGYPVLQQQPMSAAGQPHIDSMGCGISMGHMANGVPAPTNFHPIRMSSGNDMVMDHGAPDMAHIMSPMSDMPVSPTSVAPSGHFPFTASEIPGMGADVSTLEAAFTSDVVSSVGLQLAPDGSNGISRSLDQIPWNFSLSDLAADLPNLGDLGALGNYPGSPFLPSDSDILLESPDQHDIVDDFFVNSDPPCSQSDEEKS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0580 367 Pfam Plant protein 1589 of unknown function (A_thal_3526) 68 119 IPR006476 -
Lal22g0580 367 TIGRFAM A_thal_3526: uncharacterized plant-specific domain TIGR01589 65 121 IPR006476 -
Lal22g0580 367 MobiDBLite consensus disorder prediction 17 59 - -
Lal22g0580 367 PANTHER OS02G0137100 PROTEIN 15 367 IPR006476 -
Lal22g0580 367 MobiDBLite consensus disorder prediction 17 58 - -
Lal22g0580 367 PANTHER HELICASE WITH ZINC FINGER PROTEIN 15 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0580 Lal-Chr22 4000457 4022578 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0580 - - gmx:100809603 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0643 6 4195062 4201084 Lal22g0580 22 4000457 4022578 LSH
Lal22g0580 22 4000457 4022578 Lal18g1034 18 13333931 13339479 LSH