Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1320 ATGGAAGAAACCGGTTACATTATCCGGTCACCTGGAAACTTAAACCCAACAGCTGAAGAGTTCATACCCACTAACCCTATTCATTTTCCACCGGCTACCGTTTTCACCGTTCCCGTTGCCGTTGGTGTTTTCTACGGTACTCCTCACTTATCATACTCCACTTTACAACAACCACCACCACCAATGAACCTGTCCACGTCATCAACTCGTTCATTACTCATAAGTCCATTCCCTTCAAACCTTTTCATCAGTGAGTCACTGTTAAGAAGAGAACTCGAAGTTTTCGGTGACGTCAGAGGGGTACAAATGGAAAACTTATTAATTAACGGAACCGTCACGGTTCATTTCTACGATTTGAGACATGCTGAAACGGCGTTAACGGAGATTCAGAGTCAACATATGATGCAACAAGCTAGGCTTCGAAACTACTATTATTATGGTAACGGTTCGTTGAATACGGCGTCGCCGCCGGTTCCACCGCCGGCGCGTGGGATTGTTGGTGGACGCGCCGTGTGGGCTCAGTTTGTTGTTGCGGCATGTAATGATGTTATTGATGGACAGAACCAAGGGACTATTGTGGTTTTGAATTTGGATTGTGGGGTTTCGATGAAGAATGTTCGACAAATTTTTGAGCCTTTTGGTCCAATAAAGGAATTGAGAGAAGCACCAACTAAAAAGAATCAAAGATTTGTGGAGTTTTTTGACATAAGAGATGCAGCCAAGGCTTTGAAAGAGATGAATGGGAAAGAAATTTATGGAAAAGTTGTTGTTATTGAGTTTAGTAGAATTGGAAGTTTCAGCAGAAAGTTCTTCCATTCAAATAAGCCTCTCAACTTTCATAACAATGTTCCTCCACATCCATCACCCTCACACTTTTCTCCTCTTCCGCCACCTCAGCCGCATCGAAAATTCTCCACTCCTTTTGTTACTAATGCAACTAATGCTAACCCTCACTCACATTTGCCTCAGCTGCAGTTACCTTTCAACAAACCATCAAATGTTTACAAGAGAAGTTCGAAGAAGATCGCGAATAATTCTGCAGGGTCTATTGAAGATGCAATCGGTTCGATGAATTCGAGTGAAGAAATTGGTAATGTGGTTGAAAAGCAGCAAGATCAATATTCAAATGGATCTTCAAGGAGGAATGAGTCTGTAATAGATAGCACAAAGCAGCAACAAGAAGTAGATCGAAATAATAGGCATTGGAAGGGAAAGCAACGAAAGAATCAAGATACTCGATTTCTGATTAAAGAAGATGCAATTGTAGAATCTGATTCTAGAGATACTAGAACAACTGTGATGATTAAGAACATACCCAACAAATACAGTCAGAAGCTGCTAATAAACATGCTAGACAACCACTGCATACAGTGTAATGAACAGATTGGTGATGACAATGACCAACCTTATTCCTCCTATGACTTTCTTTATCTTCCCATTGATTTCAACAACAAGTGCAATGTAGGATATGGTTTTGTGAACATGACATCACCAGAAGCAACACTGAGGCTTTATAAGGCTTTCAATCATCAGCATTGGGAGGTCTTTAATTCCAGAAAAATATGTCAAATTACTTATGCTAGAGTTCAGGGTTTGGAAGCATTGAAAGAGCACTTCAAGAACTCAAAGTTCCCATGTGAAGTAGATCATTACATGCCAGTGTTGTTTTCTCCACCTAGAGATGGTAAGAAACAATTAACTGAACCACTTCCATTAGTTGGAAACAACAACAACAACAATCACCACTTCTACAATTCCATTCCAATACAAGGGGAGTGA 1779 0.4053 MEETGYIIRSPGNLNPTAEEFIPTNPIHFPPATVFTVPVAVGVFYGTPHLSYSTLQQPPPPMNLSTSSTRSLLISPFPSNLFISESLLRRELEVFGDVRGVQMENLLINGTVTVHFYDLRHAETALTEIQSQHMMQQARLRNYYYYGNGSLNTASPPVPPPARGIVGGRAVWAQFVVAACNDVIDGQNQGTIVVLNLDCGVSMKNVRQIFEPFGPIKELREAPTKKNQRFVEFFDIRDAAKALKEMNGKEIYGKVVVIEFSRIGSFSRKFFHSNKPLNFHNNVPPHPSPSHFSPLPPPQPHRKFSTPFVTNATNANPHSHLPQLQLPFNKPSNVYKRSSKKIANNSAGSIEDAIGSMNSSEEIGNVVEKQQDQYSNGSSRRNESVIDSTKQQQEVDRNNRHWKGKQRKNQDTRFLIKEDAIVESDSRDTRTTVMIKNIPNKYSQKLLINMLDNHCIQCNEQIGDDNDQPYSSYDFLYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFNHQHWEVFNSRKICQITYARVQGLEALKEHFKNSKFPCEVDHYMPVLFSPPRDGKKQLTEPLPLVGNNNNNNHHFYNSIPIQGE 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1320 592 MobiDBLite consensus disorder prediction 369 392 - -
Lal21g1320 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 263 IPR000504 GO:0003723
Lal21g1320 592 MobiDBLite consensus disorder prediction 369 409 - -
Lal21g1320 592 SMART rrm1_1 71 141 IPR000504 GO:0003723
Lal21g1320 592 SMART rrm1_1 191 259 IPR000504 GO:0003723
Lal21g1320 592 Gene3D - 355 538 IPR012677 -
Lal21g1320 592 CDD RRM3_EAR1_like 430 531 IPR034458 -
Lal21g1320 592 SUPERFAMILY RNA-binding domain, RBD 58 134 IPR035979 GO:0003676
Lal21g1320 592 PANTHER RNA BINDING PROTEIN 37 580 - -
Lal21g1320 592 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 256 IPR000504 GO:0003723
Lal21g1320 592 PANTHER TERMINAL EAR1-LIKE 1 37 580 - -
Lal21g1320 592 Pfam RNA recognition motif 2 430 540 IPR007201 -
Lal21g1320 592 Gene3D - 179 262 IPR012677 -
Lal21g1320 592 SUPERFAMILY RNA-binding domain, RBD 190 512 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1320 Lal-Chr21 16572191 16576861 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1320 - - lang:109344156 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1320 21 16572191 16576861 Lal17g1649 17 17778498 17781592 LSH