Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1649 ATGGGAGGGAAGTTAGACCCTTCAGCTGAAGAGTTCATACCCATTAACCCTTTCCCTCTTATTCCACCCATTGCTCTTGGGGTTGGGGTTTCCTATAGTACTCCTCACTTATCATACTCCATACCAAACCTCTCCACGTCACCAACACGTTCTTTACTCATAACCCCATTCCAAATCTTCATCAATCAGTCCTTATTAACAAAAGAACTCCAAGTTTTCGGTGACGTCAGAGGGGTACAAATGGAAAACTTATTAACTAACGGAACCGTCACTGTTCATTTCTATGATCTCAGACATGCACAGACGGCGTTAACAGCGATTCAGGGTCAACACATCATGCAACAAGCCACCCTTCCAAACTATTACTATTACTACTACGGTGGTGGTGGTTCTAATTTGTTCAACTCGCCGCCGTTACATCCACCGGCGCGTGGGATCATTGCGGGACGCGCCATGTGGGCCCAGTTTGTTGTAACGTCGTGCAATGATGTTCCCGATGGTCAGAACCAAGGGACTATTGTGGTTTTTAATTTGGACCGTGAGGTTTCAGCCAAGAATGTTCGACAAATTTTTGAGCCTTTTGGTCCTATAAAAGAATTGAGAGAAAGACCTAATAAGAAGAACCAAAGATTGGTGGAGTTTTATGATATAAGAGATGCAGCCAAGGCTTTGAAAAACATGAATGGGAAGAAGATTCATGGAAAAGTGGTTGTTATTGAGTATTATAGTAGAGAAGGAGAACACAATAGAAACTTCTCTATCAACTTGAATAACAATGTACCTCAACCTCTATTACTATCACCACCCTCATCTCCTTTTTCTTTCAAGAAATCATCAAGTGTTAACAAGAGAAGCTACGCAAAGAAGGTAGGGGATTCAGTAGGGACCATTGAAGAAGCAGTTAGTTCAATGAATTTGAGTGAGGAAGTTGTCAATGGAGTTGAAAAGAAGCAGCAGCAGCAGCAGCAGCAACAACAACATTCAAATGGGTCTTCAAGGAGAAATTTCATTAAGAAACATAGTTATGAGTCTATGATAGAAAGCACAAGGCATGGACAAGAAACACATAGAGGTAATAGGTATTGGAAGGGAAAGCAAAGAAAGAATCATGATATTCAGTTTCTGATAAAAGAAGATGCAATTCTAGAGTCTGGTTCTATAGATACTAGAACTACTGTCATGATCAAGAACATACCCAACAAATATAGTCAGAAGCTGCTATTAAACATGCTGGACAATCACTGCGTACAGTGCAATGAGCAGATTGGTGACTGCAATAACCAGCCTTTATCCTCTTTTGACTTTCTTTACCTTCCCATTGATTTCAATAACAAGTGCAATGTGGGATATGGGTTTGTGAACATGACATCTCCAGAGGCAACTCTCAGGCTTTATAAGGCTTTCCATCATAAACATTGGCAAGTCTTCAATTCTAGAAAAATCTGTCATATCACATATGCCAGAGTTCAGGGGTTGGAAGCATTGAAGGAGCACTTCAAGAACTCAAAGTTCCCATGCGAGCTGGATGATCACATGCCAGTGGTGTTTTGTCCACCTCGTGATGGTATGAAGGAATTAACAGAACCATTTCCAGTAGTTTCCAACAACAGCAACACAATTGGTGTCACCAATAACTCTAGTGATGAAGATAGTAGCAGCAGCATTAATGTTGAGGAGAAGTGGTGA 1686 0.4104 MGGKLDPSAEEFIPINPFPLIPPIALGVGVSYSTPHLSYSIPNLSTSPTRSLLITPFQIFINQSLLTKELQVFGDVRGVQMENLLTNGTVTVHFYDLRHAQTALTAIQGQHIMQQATLPNYYYYYYGGGGSNLFNSPPLHPPARGIIAGRAMWAQFVVTSCNDVPDGQNQGTIVVFNLDREVSAKNVRQIFEPFGPIKELRERPNKKNQRLVEFYDIRDAAKALKNMNGKKIHGKVVVIEYYSREGEHNRNFSINLNNNVPQPLLLSPPSSPFSFKKSSSVNKRSYAKKVGDSVGTIEEAVSSMNLSEEVVNGVEKKQQQQQQQQQHSNGSSRRNFIKKHSYESMIESTRHGQETHRGNRYWKGKQRKNHDIQFLIKEDAILESGSIDTRTTVMIKNIPNKYSQKLLLNMLDNHCVQCNEQIGDCNNQPLSSFDFLYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHHKHWQVFNSRKICHITYARVQGLEALKEHFKNSKFPCELDDHMPVVFCPPRDGMKELTEPFPVVSNNSNTIGVTNNSSDEDSSSSINVEEKW 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1649 561 SMART rrm1_1 51 120 IPR000504 GO:0003723
Lal17g1649 561 SMART rrm1_1 172 240 IPR000504 GO:0003723
Lal17g1649 561 SUPERFAMILY RNA-binding domain, RBD 41 115 IPR035979 GO:0003676
Lal17g1649 561 CDD RRM3_EAR1_like 390 491 IPR034458 -
Lal17g1649 561 PANTHER RNA BINDING PROTEIN 34 549 - -
Lal17g1649 561 Pfam RNA recognition motif 2 390 500 IPR007201 -
Lal17g1649 561 MobiDBLite consensus disorder prediction 309 332 - -
Lal17g1649 561 MobiDBLite consensus disorder prediction 309 336 - -
Lal17g1649 561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 237 IPR000504 GO:0003723
Lal17g1649 561 MobiDBLite consensus disorder prediction 537 561 - -
Lal17g1649 561 Gene3D - 306 498 IPR012677 -
Lal17g1649 561 SUPERFAMILY RNA-binding domain, RBD 172 472 IPR035979 GO:0003676
Lal17g1649 561 PANTHER TERMINAL EAR1-LIKE 1 34 549 - -
Lal17g1649 561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 244 IPR000504 GO:0003723
Lal17g1649 561 Gene3D - 160 243 IPR012677 -
Lal17g1649 561 MobiDBLite consensus disorder prediction 537 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1649 Lal-Chr17 17778498 17781592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1649 - - lang:109344156 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1320 21 16572191 16576861 Lal17g1649 17 17778498 17781592 LSH