Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1315 GAAAGGGATGAAATTTCTTCACTACTTCGACTTGACAACTTGACTTTAACCATTGCCCTTCCTTCTTTTCCTTCACTGCTTGAAGCAATGAACCCAGAGCTTGAGGCTTGGACAGCTTTTGTTGCAATTTTATTGTTTATAGGCTTTATTCTGAAAGATACAATAATGGGTGGAAGGAATTCAAGAGAATCTGAAAATGGTAGTAAGAGACATGTTCCTTCATCTTCATGGGATAATAACAATTATGATTATGTTGGTGATGGGTACCAATCATCACAATCACCTTACCCATCTCACCAATCTTCATGGGATCATAACAATCATCAAAACAACCATGCATCTGTATCAGCACCAATTCATGATTATGGCCAAAACCCAAGAAGAAGGTTGCATAGAAAGTATTCTAAGATTGCTGATAATTACCATTCTTTGGATGAGGTTACTGCTGCTCTTGCAAATGCTGGCTTGGAATCTTCTAATCTCATTGTGGGAATTGATTTCACTAAGAGCAATGAGTGGACAGGGAAGAGGTCGTTCAATCGAAAGAGTTTGCATCACATCGGAAATGGTTATAATCCTTATGAACAGGCAATCTCAATTATCGGGAAAACTTTATCTGTTTTCGATGAAGATAATTTGATTCCTTGTTTCGGATTTGGAGATGCATCAACACATGATCAAGATGTATTTTCCTTCCATTCTGATGAGAGGTTCTGCAACGGGTTTGAGGAAGTTTTGACGCGATACAAAGAAATTGTTCCTCGTCTCAAACTTGCAGGACCCACTTCATTTGGCCCTATTATTGAAATGGCCGTGACCATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTTATAATTGCTGATGGACAGGTGACCCGAAGCGTTGACACGCAGCATGGGCACTTAAGTCCACAGGAAAAAAAGACAATAGATGCAATTGTAAAAGCAAGTGAGTATCCCCTATCCATAGTTTTGGTTGGAGTTGGGGATGGACCATGGGACATGATGAAAGAATTCGACGACAACATCCCTTCGCGAGCATTCGACAATTTTCAGTTTGTGAATTTTACGGAAATAATGTCGAAGAATGATGATGCAACAAGAAGAGAGGCCGATTTTGCCCTTGGAGCCTTGATGGAGATACCTTCTCAATACAAGGCAACCATAGATCATGGCATATTAGGTACAAGGAGGGGACATTCACCAGATAGGGTTGCTCTACCCCCACCTCTTTATGGTATCGGTAGGACTTCTTCTAGCAACGTCGAAAGATCTTTCCGATCGAATAGTTCTCAGCAGAGCGCGCCTATGGATACTGGTGGAAGTTGCACAGAACCATCTTCGAGTTCTTTATATGATAACAAGGTTTGCCCTATTTGTCTTACTAATGCGAAGGATATGGCCTTTGGTTGCGGGCATCAGACTTGTTGTGAATGTGGAGAAGACCTTGAATTATGCCCGATATGCCGGAGCACGATCCAGGCCAGAATAAGGCTTTTCTAG 1509 0.4155 ERDEISSLLRLDNLTLTIALPSFPSLLEAMNPELEAWTAFVAILLFIGFILKDTIMGGRNSRESENGSKRHVPSSSWDNNNYDYVGDGYQSSQSPYPSHQSSWDHNNHQNNHASVSAPIHDYGQNPRRRLHRKYSKIADNYHSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGNGYNPYEQAISIIGKTLSVFDEDNLIPCFGFGDASTHDQDVFSFHSDERFCNGFEEVLTRYKEIVPRLKLAGPTSFGPIIEMAVTIVEQSGGQYHVLLIIADGQVTRSVDTQHGHLSPQEKKTIDAIVKASEYPLSIVLVGVGDGPWDMMKEFDDNIPSRAFDNFQFVNFTEIMSKNDDATRREADFALGALMEIPSQYKATIDHGILGTRRGHSPDRVALPPPLYGIGRTSSSNVERSFRSNSSQQSAPMDTGGSCTEPSSSSLYDNKVCPICLTNAKDMAFGCGHQTCCECGEDLELCPICRSTIQARIRLF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1315 502 PANTHER RING-FINGER PROTEIN 56 502 - -
Lal21g1315 502 CDD RING-HC_RGLG_plant 458 502 IPR045317 GO:0061630|GO:0070534
Lal21g1315 502 ProSiteProfiles Zinc finger RING-type profile. 459 492 IPR001841 -
Lal21g1315 502 SUPERFAMILY vWA-like 160 342 IPR036465 -
Lal21g1315 502 PANTHER COPINE FAMILY PROTEIN 1 56 502 - -
Lal21g1315 502 MobiDBLite consensus disorder prediction 58 111 - -
Lal21g1315 502 SMART VWA_4 158 361 IPR002035 -
Lal21g1315 502 MobiDBLite consensus disorder prediction 420 451 - -
Lal21g1315 502 Pfam Copine 183 396 IPR010734 -
Lal21g1315 502 Pfam Zinc finger, C3HC4 type (RING finger) 456 496 - -
Lal21g1315 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 502 IPR013083 -
Lal21g1315 502 SUPERFAMILY RING/U-box 451 496 - -
Lal21g1315 502 MobiDBLite consensus disorder prediction 70 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1315 Lal-Chr21 16465202 16469510 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1315 K16280 - gmx:100798816 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1315 21 16465202 16469510 Lal17g1646 17 17755416 17760789 LSH