Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1646 ATGAACCTAGAGTTGGAGGTTTGGACAGCTTTTGTTGCAGTTTTACTGTTTGTGGGTTTTATTCTGAAAGACATAATCATGGGTGGGAAGAGTTCAAGAGAATCTGACAGTAGGAGTAATGTTAGGAGACATGTTCCTTCATCTTCATGGGATCATAACAATTATGGTGGTTATGATGGTGGATACCCTTCTCATCAAAATCCATATCAAACACCTCAAAATCAACATGCATCAGCACCAGTTCTTGACTATGCAACCCAACAACCAAGAAGGAGATTGGATAAAAGATATTCCAGGATTGCTGATAATTACCACTCACTTGATGAGGTTACTACTGCTCTTGCTTATGCTGGCCTGGAATCTTCTAATCTCGTTGTCGGCATTGATTTCACAAAAAGCAACGAATGGACAGGGAAGAGGTCATTTAATCGGAAGAGTTTGCATCACATTGGAAGTGGTTATAATCCATATGAACAGGCAATATCGATTATCGGGAAAACTTTATCAGTTTTCGATGAAGATAATTTGATTCCTTGTTTCGGATTTGGAGATGCATCAACACATGATCAAGATGTATTTTCCTTCCATTCTGATGAGAGGTTCTGCAATGGGTTTGAGGAAGTTTTGACACGATACAGAGAAATTGTTCCTCACCTCAAACTCGCAGGACCCACTTCGTTTGCCCCGATCATTGAAATGGCCATCACCATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTCATAATTGCTGATGGACAGGTGACCAGAAGCATTGACACACAGCACGGCCACTTAAGTCCACAGGAAAAAAAGACGATAGATGCAATTGTAAAAGCAAGTGAATACCCACTGTCCATAGTTTTAGTTGGAGTTGGAGATGGACCATGGGATATGATGAAAGAGTTCGATGATAACATCCCTTTGCGAGCATTCGACAATTTTCAGTTTGTGAATTTTACAGAAATAATGTCGAAGAATGTTGACGCAACTAGAAAAGAGGCAGAGTTTGCCCTTGGAGCCTTGATGGAGATACCTTCTCAGTACAAGGCAACCATTGATCATGGCATATTGGGTACAAGGAGGGGACATTCACCGGATAGGGTTGCTCTACCCCCGCCTATTTATGGTATGGGAAGGAGTTCTTCTAGCAACACCGGAAGGTCTTTCCGATCGAACAGTTTTCAGCAGAGTGCGCCTATGGATACTGGTAGAGGTCACACAGAACCATCTCCAAGTTCTTTATATGATAACAGGGTTTGCCCTATTTGTCTTACTAATGGAAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGCGAATGTGGAGAAGACCTCGAATTATGCCCCATTTGCCGGAGCACAATCCAGACTAGAATAAAGCTTTTCTAG 1398 0.4213 MNLELEVWTAFVAVLLFVGFILKDIIMGGKSSRESDSRSNVRRHVPSSSWDHNNYGGYDGGYPSHQNPYQTPQNQHASAPVLDYATQQPRRRLDKRYSRIADNYHSLDEVTTALAYAGLESSNLVVGIDFTKSNEWTGKRSFNRKSLHHIGSGYNPYEQAISIIGKTLSVFDEDNLIPCFGFGDASTHDQDVFSFHSDERFCNGFEEVLTRYREIVPHLKLAGPTSFAPIIEMAITIVEQSGGQYHVLLIIADGQVTRSIDTQHGHLSPQEKKTIDAIVKASEYPLSIVLVGVGDGPWDMMKEFDDNIPLRAFDNFQFVNFTEIMSKNVDATRKEAEFALGALMEIPSQYKATIDHGILGTRRGHSPDRVALPPPIYGMGRSSSSNTGRSFRSNSFQQSAPMDTGRGHTEPSPSSLYDNRVCPICLTNGKDMAFGCGHQTCCECGEDLELCPICRSTIQTRIKLF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1646 465 SMART VWA_4 121 324 IPR002035 -
Lal17g1646 465 MobiDBLite consensus disorder prediction 30 85 - -
Lal17g1646 465 CDD RING-HC_RGLG_plant 421 465 IPR045317 GO:0061630|GO:0070534
Lal17g1646 465 Pfam Copine 146 359 IPR010734 -
Lal17g1646 465 SUPERFAMILY vWA-like 122 305 IPR036465 -
Lal17g1646 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 465 IPR013083 -
Lal17g1646 465 PANTHER COPINE FAMILY PROTEIN 1 27 465 - -
Lal17g1646 465 CDD vWA_copine_like 100 350 IPR010734 -
Lal17g1646 465 MobiDBLite consensus disorder prediction 362 414 - -
Lal17g1646 465 SUPERFAMILY RING/U-box 416 461 - -
Lal17g1646 465 MobiDBLite consensus disorder prediction 379 414 - -
Lal17g1646 465 Pfam Zinc finger, C3HC4 type (RING finger) 419 460 - -
Lal17g1646 465 MobiDBLite consensus disorder prediction 64 82 - -
Lal17g1646 465 PANTHER RING-FINGER PROTEIN 27 465 - -
Lal17g1646 465 ProSiteProfiles Zinc finger RING-type profile. 422 455 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1646 Lal-Chr17 17755416 17760789 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1646 K16280 - gmx:100798816 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1315 21 16465202 16469510 Lal17g1646 17 17755416 17760789 LSH