LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal21g1305	ATGGGTGGAAGAAGAAGAAGAAAGGGTTTGAATGAAAACAAAGAGAATATGAAGAAGCGTTCAAAATCGATTGAACCTTCTTCCATTTCCACCATAGATCTTCATTCTTCTCGATTCAATATTCAAAACCTTAATTTCGATAACTATTACCAGGAACAACGAATCGTTACTTCTCAACATTGGGATTCATTTCTCAATGTTCTAAGAACTCCATTACCTTCCTCTTTTCGAATCAATTCCAATAGCCAATTTTCTGAGGATATTCGTTCTCAATTGGAGAATGATTTTTTGCATTCACTTCGGTTTGAGACTGTTGAAGAGGATAATGTGGATCCTGTTATACCTTTGCCATGGTATCCGGAGAATCTTGCATGGCAATCGAAATTTTCACGTATGCAACTTAGGAAGAATCAAACACTAACGAGGTTTCATGAATTCTTAAAGCTACAAAGTGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTTCCTCCTTTGTTATTGGATGTACATTCAAATCATTTTGTACTTGACATGTGTGCTGCACCTGGTTCAAAAACATTCCAATTGCTTGAGATTATACACAAATCAAATGAAGCAGGATCATTACCAGATGGAATGGTTATAGCAAATGATCTAGATATACAAAGATGTAATCTTCTCATCCATCAAGCTAAACGACTGTGCACATCAAATCTAATCGTCACTAATCATGAGGCTCAGAACTTCCCAGGATGTTTTCTAAACAGGAATTACGATGCAATGGAGCCTGATCAGAATATCGACCAACTGTTATTCGATCGTGTTCTATGTGATGTCCCATGCAGCGGAGATGGTACCCTTCGTAAGGCACCTGAGCTCTGGAGGAAGTGGAACACTGGGACAGGAAATGGGCTTCATAACCTACAAGTTCTAATTGCTATTCAAGGCTTATCTTTACTTAAAGTTGGTGGAAGAATGGTTTATTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCCGTGGTTGCAGAGGTTTTGAGGAGGTCTGGAGGATCTATTAAACTTGTTGATGTCTCTAGTGAGCTTCCCCAACTTATTCGTCGGCCAGGTCTTAAGAAATGGAAGGTATCTGACAAGGGTTTGTGGTTGGTTTCTTGCAAAGATGTTCCCAAGTCTCGTAGAACTGTAGTTCTTCCTAGCATGTTTCCAGCTGGCGGTAGTTATCAGGATGCTGTTGGCATTGAAGATGATACTACTGATGATGCTAATGGAAATTCTGAAGATGTTCAAGCAGCGGAGAATCCTGTGATGCATGAGTTTACTGAGGAAGTTTCTGGTTTCCCTCTAGAGCGTTGCATGAGGTTAGTGCCCCATGATCAGAACACTGGAGCCTTCTTTGTTGCCGTGTTACAGAAAGTTTCTCCTCTGTCAGCAAAAGCAATTCAGGTAAAACCTAGAAAAGAAGTTGATAATCAACATGTAGAACCAGCAGACCAGAGAAATGAGCATGCACAAGAATTGCAAATTAATCTATCAGAAAGTAAACATAAAGAGGTTTCGGAAGCTGTTTCAGGGGCTAATATGAACGACAGTGAACCCAATGCAGCAGATTTAGAAGTTAGTCCTGTTACATGTGAAGAAGGGGATTCCAATGGGGCCCAGGAACTCTGTGATGTAGAAAACATAGCAAAGATTACGCCAGGCAAAAGAAAGTTGCAGAGTCGAGGCAAATGGAGAGCCATTGACCCTGTTGTCTTCTTCAAAGATGAAATGATTATTAACAGCATAAAGGCATTTTATGGTATTGACGAGAAGTTCCCATTTGATGGTCATCTTGTTACAAGAAACAATGATACAAGCCATGTGAAAAGAATTTACTATGTCTCCAAGTCAGTGAAGGATGTTCTTGAGTTGAACTTCTCAGTTGGGCAGCAACTTAAAATAACTTCTGTTGGCCTGAAGATTTTTGAAAGACAAACGTCATTGGCAGGTATCTCTGCATCTTGTGCTTTTCGGATATCATCTGAAGGATTGCCCCTTGTTCTCCCTCACATCACCAAACAGATTCTAGGTGTGTCTCCTATAGACTTCAAGCATCTTCTGCAGTATAGAGCTGTAAAATTTGCAGATTTTGTTGATGCCGAGTTTGGTGAGAGAGCAGCAAATTTAATGCCAGGCTGTTGTGTCCTAGTTTTGGGTGAAGGGAACAGAGCTGCTACAATGGCTTTCCAAGTGGATAAATCAACAATAGCCATTGGATGCTGGAAGGGTAAGGCGACTTTGACCCTGATGGTTACTGAACTGGATCGGCAAGAACTGCTCGAAAGGTTTTTAACGCGTTTAAACACGAAGAATGGCTCCTCCATGCATGGGAACAACCTTTCTAACAACATTGGAGACTCAATTGGTAAAGATGATGTCAAAGCTAATGGGTGTTAG	2427	0.4054	MGGRRRRKGLNENKENMKKRSKSIEPSSISTIDLHSSRFNIQNLNFDNYYQEQRIVTSQHWDSFLNVLRTPLPSSFRINSNSQFSEDIRSQLENDFLHSLRFETVEEDNVDPVIPLPWYPENLAWQSKFSRMQLRKNQTLTRFHEFLKLQSEIGNITRQEAVSMVPPLLLDVHSNHFVLDMCAAPGSKTFQLLEIIHKSNEAGSLPDGMVIANDLDIQRCNLLIHQAKRLCTSNLIVTNHEAQNFPGCFLNRNYDAMEPDQNIDQLLFDRVLCDVPCSGDGTLRKAPELWRKWNTGTGNGLHNLQVLIAIQGLSLLKVGGRMVYSTCSMNPIENEAVVAEVLRRSGGSIKLVDVSSELPQLIRRPGLKKWKVSDKGLWLVSCKDVPKSRRTVVLPSMFPAGGSYQDAVGIEDDTTDDANGNSEDVQAAENPVMHEFTEEVSGFPLERCMRLVPHDQNTGAFFVAVLQKVSPLSAKAIQVKPRKEVDNQHVEPADQRNEHAQELQINLSESKHKEVSEAVSGANMNDSEPNAADLEVSPVTCEEGDSNGAQELCDVENIAKITPGKRKLQSRGKWRAIDPVVFFKDEMIINSIKAFYGIDEKFPFDGHLVTRNNDTSHVKRIYYVSKSVKDVLELNFSVGQQLKITSVGLKIFERQTSLAGISASCAFRISSEGLPLVLPHITKQILGVSPIDFKHLLQYRAVKFADFVDAEFGERAANLMPGCCVLVLGEGNRAATMAFQVDKSTIAIGCWKGKATLTLMVTELDRQELLERFLTRLNTKNGSSMHGNNLSNNIGDSIGKDDVKANGC	808

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal21g1305	808	PANTHER	TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED	6	787	-	-
	Lal21g1305	808	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	64	469	IPR001678	GO:0008168
	Lal21g1305	808	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	58	469	IPR029063	-
	Lal21g1305	808	PRINTS	RNA (C5-cytosine) methyltransferase signature	179	189	IPR023267	GO:0001510
	Lal21g1305	808	PRINTS	RNA (C5-cytosine) methyltransferase signature	269	281	IPR023267	GO:0001510
	Lal21g1305	808	PRINTS	RNA (C5-cytosine) methyltransferase signature	319	335	IPR023267	GO:0001510
	Lal21g1305	808	PRINTS	RNA (C5-cytosine) methyltransferase signature	451	468	IPR023267	GO:0001510
	Lal21g1305	808	Pfam	16S rRNA methyltransferase RsmB/F	168	345	IPR001678	GO:0008168
	Lal21g1305	808	MobiDBLite	consensus disorder prediction	481	500	-	-
	Lal21g1305	808	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	6	787	IPR023267	GO:0001510
	Lal21g1305	808	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	125	146	IPR023270	GO:0016428
	Lal21g1305	808	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	353	372	IPR023270	GO:0016428
	Lal21g1305	808	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	642	654	IPR023270	GO:0016428
	Lal21g1305	808	Gene3D	Vaccinia Virus protein VP39	42	468	IPR029063	-
	Lal21g1305	808	MobiDBLite	consensus disorder prediction	1	27	-	-
	Lal21g1305	808	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lal21g1305	808	MobiDBLite	consensus disorder prediction	481	498	-	-
	Lal21g1305	808	ProSitePatterns	NOL1/NOP2/sun family signature.	268	279	IPR018314	GO:0003723\|GO:0008168

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal21g1305	Lal-Chr21	16324841	16332951	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal21g1305	K15334		-	gmx:100808598	1175.61

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal14g1307	14	14697607	14708317	Lal21g1305	21	16324841	16332951	PCT