LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal14g1307	ATGGGAAGAGGAGGTAGGTCTCGCACTCAGAGAAAACACTTCCGTCAAAGCAGAGAAAACGTGTGGAAGCGTTCTAAATCAGATCCAAATTCCAAACCAAATGATGAAAATCAAACTCAAACCAATCACACTTCGTGGACTCCTTTCGCTACCGAAAACACCTCTTTTGATCTCTACTACAAAGAACAGCGCATAGTGGACGAGAAAGAATGGGATCAATTCGTCACAGTTCTCAGAACTCCTTTGCCCGCTTCTTTTCGAATCAATTCCAGTACGCAGTTCGCTGATGACATTCGTTCGCAATTGGAGAATGATTTCGCACATACTCTTCGTGATGAGGTTACTGAAGGAGGTGAAACGGAGGCTATTAGGCCTTTGCTTTGGTATCCAGGGAATTTTGCTTGGCATTCCAATTTTTCGCGAATGCAGCTCAGGAAGAACCAAACACTTGAGAGGTTCCATGAATTCTTGAAGCTAGAAAATGAGATTGGAAATATTACAAGGCAGGAAGCTGTCAGTATGGTGCCTCCCCTCTTTTTGGATGTGCATTCAGATCATTTTGTACTTGATATGTGTGCTGCACCAGGTTCAAAAACGTTCCAATTGCTTGAGATTATACACCAATCAACTAAAGCAGGATCGCTACCTGATGGAATGGTTATAGCAAATGATCTTGATGTCCAAAGATGTAATCTTCTCATCCACCAAACAAAAAGAATGTGCACAGCGAACCTAATTGTCACTAATCATGAAGCACAGAACTTCCCAGGATGCCGTCTAAACAGGAATCACGAAAAAGTCGAGCCAGATCAGCATATTGGCCAACTCTTATTTGACCGTGTTTTGTGTGATGTCCCATGCAGTGGAGATGGTACTCTTCGTAAGGCACCTGATCTTTGGAGGAAATGGAACTCAGGGATGGGACAAGGGCTTCACAGCCTACAAGTTCTAATTGCTATGCGAGGTTTATCTTTACTTAAAGTTGGTGGAAGAATGGTTTATTCAACATGCTCAATGAATCCTATTGAGAATGAAGCCGTGGTTGCAGAGGTTTTGCGTAGGTGTGGAGGGTCGGTTGAACTTGTTGATGTCTCAAGTGAGCTTCCCCAACTTATTCGCCGGCCAGGTCTCAAGAGCTGGAAGGTACTTGATAAGGGCACATGGTTAGTCTCTTACAAAGATGTGCCTAAGTACCGTAGAAGTGTAATTCTTCCGGGTATGTTTCCTTCTGGCGGAAGCTATCAGGAACTTGTTGACAATGGTAATTGTAATGCTGACATGGGAGATAATATTAGTGTTTGTACCAATGGAAATTCTGAAGATGGTGTTCAAACAGTTGAGGAACCTGTGACTCATCAGTCTGCTGAGGAAGTTTGTGATTTCCCTTCAGAGCATTGCATGAGGATAGTGCCTCATGATCAAAATACCGGAGCCTTCTTTATTGCAGTGCTGCAAAAAGTTGCTCCTCTGCTGGTGCGTTGTTGCCATAGTAAGTTTTTGATTGCTTTTCTTGCAGCAACTCAAGAAAAATCTAAAACAGAAATTGTCGAGCAAAATATAGAACCATTAAATCCGAGTCTTGAAGATGCTCGAGCAGAGCAGATTAATTCATCAGAAAGTGCACTTGAAGAAGTCTCCAAAGCAGTTCCCGAGGAAATTTTAAATGACAATGAACAAAATACAGAAGATTTAGAAGTTAGTCCTGTTGAAGAACAGGATACCAAGGAAACTGAAGAGTCCCCCAGTGTAGAAAACATGGCAAAGAAGGTTCCAGCCAAAAGAAAGTTACAGATTCAAGGCAGATGGAGAGGCGTTGACCCTGTTGTCTTTTTCAAAGATGAAGCGATTATTAATAGTATAAGGGCATTTTATGGCATCAGTGAGCATTTTCCTTTGGATGGTCACCTTATTACAAGAAACAATGATGCAAGTCATGTGAAAAGAATTTATTATGTCTCCAAGTCAGTCAAGGATGTTCTTAAGTTGAACTTCTCTGTTGGGCAGCAACTTAAAATAACTTCTGTTGGCCTGAAGATGTTTGAAAGACAATCAGCACAAGAAGGTAACGATGCTCCATGTGCTTTCCGGATATCATCTGAAGGATTGCCCCTTGTACTCCCATACATAACCAAACAGATTTTACATGCATTTCCAGAAGACTTCAAGCGTCTTCTCCAGGATAAAGATGTAAAGTTTGCAGATTTTGCTGATGCTGAGTTTGGTGAGAAGGCAGCAAACCTATTGCCAGGGTATTGTGTGGTAATTCTGGATAAAGGGAACAGATCTGCAACAGAGTCCCCCAAAGTAGATGAGTCAACGATAGCCATTGGATGCTGGAGGGGTAGGGTGAGATTGACAGTGATGGTCACTGCAATGGATTGTCAAGAATTGCTTGCAAGGCTTTTAATACGTCTGGACCCAGAAAAGGGTGCTTCAGTGAATGTGGACAGATCCTCTAATATTGTGGGGCGTGAAGTACAGCCTGTACCTGAGATCAATGGTAAAACTGATGCTGATGTGAAAGCTGCAGTGAGTTGA	2538	0.4236	MGRGGRSRTQRKHFRQSRENVWKRSKSDPNSKPNDENQTQTNHTSWTPFATENTSFDLYYKEQRIVDEKEWDQFVTVLRTPLPASFRINSSTQFADDIRSQLENDFAHTLRDEVTEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSTKAGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQNFPGCRLNRNHEKVEPDQHIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNSGMGQGLHSLQVLIAMRGLSLLKVGGRMVYSTCSMNPIENEAVVAEVLRRCGGSVELVDVSSELPQLIRRPGLKSWKVLDKGTWLVSYKDVPKYRRSVILPGMFPSGGSYQELVDNGNCNADMGDNISVCTNGNSEDGVQTVEEPVTHQSAEEVCDFPSEHCMRIVPHDQNTGAFFIAVLQKVAPLLVRCCHSKFLIAFLAATQEKSKTEIVEQNIEPLNPSLEDARAEQINSSESALEEVSKAVPEEILNDNEQNTEDLEVSPVEEQDTKETEESPSVENMAKKVPAKRKLQIQGRWRGVDPVVFFKDEAIINSIRAFYGISEHFPLDGHLITRNNDASHVKRIYYVSKSVKDVLKLNFSVGQQLKITSVGLKMFERQSAQEGNDAPCAFRISSEGLPLVLPYITKQILHAFPEDFKRLLQDKDVKFADFADAEFGEKAANLLPGYCVVILDKGNRSATESPKVDESTIAIGCWRGRVRLTVMVTAMDCQELLARLLIRLDPEKGASVNVDRSSNIVGREVQPVPEINGKTDADVKAAVS	845

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal14g1307	845	MobiDBLite	consensus disorder prediction	14	31	-	-
	Lal14g1307	845	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	3	813	IPR023267	GO:0001510
	Lal14g1307	845	PRINTS	RNA (C5-cytosine) methyltransferase signature	189	199	IPR023267	GO:0001510
	Lal14g1307	845	PRINTS	RNA (C5-cytosine) methyltransferase signature	279	291	IPR023267	GO:0001510
	Lal14g1307	845	PRINTS	RNA (C5-cytosine) methyltransferase signature	329	345	IPR023267	GO:0001510
	Lal14g1307	845	PRINTS	RNA (C5-cytosine) methyltransferase signature	469	486	IPR023267	GO:0001510
	Lal14g1307	845	ProSitePatterns	NOL1/NOP2/sun family signature.	278	289	IPR018314	GO:0003723\|GO:0008168
	Lal14g1307	845	Pfam	16S rRNA methyltransferase RsmB/F	179	363	IPR001678	GO:0008168
	Lal14g1307	845	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	74	487	IPR001678	GO:0008168
	Lal14g1307	845	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	64	487	IPR029063	-
	Lal14g1307	845	MobiDBLite	consensus disorder prediction	32	49	-	-
	Lal14g1307	845	MobiDBLite	consensus disorder prediction	568	588	-	-
	Lal14g1307	845	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	135	156	IPR023270	GO:0016428
	Lal14g1307	845	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	363	382	IPR023270	GO:0016428
	Lal14g1307	845	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	670	682	IPR023270	GO:0016428
	Lal14g1307	845	MobiDBLite	consensus disorder prediction	1	49	-	-
	Lal14g1307	845	MobiDBLite	consensus disorder prediction	553	588	-	-
	Lal14g1307	845	Gene3D	Vaccinia Virus protein VP39	53	394	IPR029063	-
	Lal14g1307	845	PANTHER	TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED	3	813	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal14g1307	Lal-Chr14	14697607	14708317	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal14g1307	K15334		-	gmx:100808859	1271.53

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal14g1307	14	14697607	14708317	Lal21g1305	21	16324841	16332951	PCT