Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0536 ATGGCTAATAACGCAGTTTCGTGTGCTGAGAGAGCAACTAGTGACATGCTCATTGGTCCTGATTGGGCAATTAACATTGAGTTGTGTGACATCATTAATATGGACGCTGGGCAAGCAAAAGATGCATTAAAAATACTTAAGAAGCGTTTGGGAAGTAAAAATCCCAAAATACAACTTCTGGCTCTTTTTGTACTCGAGACCCTTAGTAAAAATTGTGGTGAAAGTGTATTTCAGCAGATCGTTGAGCGGGATATCTTACATGATATGGTTAAGATAGTGAAGAAGAAGCCTGAGTTAAATGTGAGGGAAAAGATACTGATTTTAATTGATACGTGGCAAGAAGCTTTTGGGGGGCCAACTGGAGTTTATCCCCAGTATTATGCAGCATATAATGAATTAAAGTCTGCTGGAGTTGATTTTCCACCACGAGATGAGAATAGTGTGCCATTCTTCACCCCTCCTCAAACCCAGCCGGTTGTTCACTCTGCTGCAGAATATGGTGATGTTGCTCTTCAGGCTTCTCTTCAGTCAGATGCATCTGGCCTTAGTTTCGAAGAGATTCAAACTGCTCAAGGAATAGCTGATGTTTTGACGGAAATGCTTAGTGCCTTGAATCCCAAAGACCCTGAGGGTGTGAATGATGAAGTGATTGTTGACCTTGTTGACCAGTGCCGATCTTACCAAAAACGTGTCATGGTTCTTGTGAACAATGCTGCGGATGAGCAGCTTTTAGGTCAGGGATTAGCAGTGAATGACAGCCTTCAGCGCGTACTCTGTCGACATGATGATATTGCAAAAGGAACTGCTGATGCAGGTGCAAGAGGAACAGAAACTTCAGTTCTGCCCCTTGTAAATATAAACCATGAGGATGATGAGTCAGAAGATGATTTTGCTCAACTAGCCCATAGGTCATCAAGAGATACTCATGCACAGAATCGGAAGCCAGCTTTTGACAAGGCAGAGCCATTGAGGGTAAACCCACTTCTTCCCCCACCACCAGCATCAAAGAAGCCAGTCTACTCGGACACCAGCATGGTTGATTATCTCAGTGGTGATACATACAACACAGCAGAAGAACCCTTTGAAAACACATTTGCACCCCCTGTTCATGCTAGCCCTAATCCTGCCTCATCAACGATACCGGCAGTGTCCTCACCCCCTCCTCATGCAGTGAATACCTCATCACCAATTTTAGGGAAACAGCCTATGTACGATGAGACATCTCCCATGAAAAAAACTTCAGAAGAACTGCCACCGGCACCCTGGGACACACAATCTAGTGGCATCATTCCACCCCCACCTTCAAAGCATAATCAGAGACAGCAGTTTTTTCAGCAACAAGATGGGTCTCTTTCAAATGGTGGATCTACTGCCTCATATGAAAGCTTGGTGGGACAAACTCAGAATCTGTCTCTGAATTCATCCACCCCAACCAAACAACAGAAGCCAGCAGAAGATGCCCTTTTCAAAGATCTAGTTGATTTTGCGAAATCCAAAACTTCTTCATCTTCGAACCCCAATAGATCATATTGA 1533 0.4403 MANNAVSCAERATSDMLIGPDWAINIELCDIINMDAGQAKDALKILKKRLGSKNPKIQLLALFVLETLSKNCGESVFQQIVERDILHDMVKIVKKKPELNVREKILILIDTWQEAFGGPTGVYPQYYAAYNELKSAGVDFPPRDENSVPFFTPPQTQPVVHSAAEYGDVALQASLQSDASGLSFEEIQTAQGIADVLTEMLSALNPKDPEGVNDEVIVDLVDQCRSYQKRVMVLVNNAADEQLLGQGLAVNDSLQRVLCRHDDIAKGTADAGARGTETSVLPLVNINHEDDESEDDFAQLAHRSSRDTHAQNRKPAFDKAEPLRVNPLLPPPPASKKPVYSDTSMVDYLSGDTYNTAEEPFENTFAPPVHASPNPASSTIPAVSSPPPHAVNTSSPILGKQPMYDETSPMKKTSEELPPAPWDTQSSGIIPPPPSKHNQRQQFFQQQDGSLSNGGSTASYESLVGQTQNLSLNSSTPTKQQKPAEDALFKDLVDFAKSKTSSSSNPNRSY 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0536 510 MobiDBLite consensus disorder prediction 370 401 - -
Lal21g0536 510 Pfam VHS domain 10 134 IPR002014 GO:0035091|GO:0043130
Lal21g0536 510 SUPERFAMILY ENTH/VHS domain 9 141 IPR008942 -
Lal21g0536 510 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Lal21g0536 510 MobiDBLite consensus disorder prediction 429 482 - -
Lal21g0536 510 MobiDBLite consensus disorder prediction 292 341 - -
Lal21g0536 510 CDD VHS 10 135 - -
Lal21g0536 510 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Lal21g0536 510 PIRSF TOM1 1 509 IPR014645 -
Lal21g0536 510 Gene3D - 2 151 IPR008942 -
Lal21g0536 510 MobiDBLite consensus disorder prediction 358 485 - -
Lal21g0536 510 Gene3D - 174 273 IPR038425 -
Lal21g0536 510 Pfam GAT domain 192 267 IPR004152 GO:0035091|GO:0043130
Lal21g0536 510 PANTHER TOM1-LIKE PROTEIN 1 509 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lal21g0536 510 PANTHER TOM1-LIKE PROTEIN 4 1 509 - -
Lal21g0536 510 MobiDBLite consensus disorder prediction 295 320 - -
Lal21g0536 510 CDD GAT_GGA_like_plant 186 264 - -
Lal21g0536 510 SUPERFAMILY GAT-like domain 146 267 - -
Lal21g0536 510 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0536 Lal-Chr21 3897244 3904001 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0536 - - gmx:100792343 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0536 21 3897244 3904001 Lal21g0536 21 3897244 3904001 ECH
Lal17g0509 17 3523151 3529040 Lal21g0536 21 3897244 3904001 LSH