Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0509 ATGGCTAATAACGCGTCTGCATGTGCTGAGAGAGCAACTAGTGACATGCTCATTGGTCCTGACTGGGCAATTAACATTGAGTTGTGTGACATAATTAATATGGACCCTAGGCAAGCAAAAGATGCATTAAAGATACTCAAGAAGCGTTTGGGCAGTAAAAATCCCAAAAAACAGCTTCTGGCTCTTTTTGTACTGGAGACCATTAGTAAGAACTGTGGTGAAAGTGTATTTCAGCAGATCGTTGAGCGGGATATCTTACATGATATGGTTAAGATAGTGAAGAAGAAGCCGGACTTAAATGTGAGGGAAAAGATACTGATTCTAATTGATACATGGCAAGAAGCTTTTGGAGGGCCAACCGGAGTTTATCCCCAATACTATGCAGCATATAATGAATTAAAGTCTTATGGAGTTGATTTTCCGCCAAGAGATGAGAATAGTGTGCCATTCTTCACTCCTCCTCAAACCCAGCCAGTTGTTCATTCCACTCCAGAATATGATGATGTTGCTATTCAGGCTTCTCTTCAGTCAGATACATCTGGCCTTAGTTTCGAAGAGATTCAAACTGCTAAAGGAATAGCTGATGTGTTGACGGAAATGCTTAGTGCTTTGAATCCCAAAGACCCTGAGGGTGTGAAGGAGGAAGTGATTGTTGACCTTGTTGACCAGTGCCACTCTTACCAAGAGCGTGTCATGGTTCTAGTGAACAATACTACGGATGAGCAACTTTTAGGTCAGGGATTAGAACTGAATGACAGCCTTCAGCGAGTACTCCGTCGACATGATGATATTGCGAATGGCACTGCTGATGCTGGTGCAATAGGAATTGAAACTTCAGTTCTGCCACTTGTAAATGTAAACCATGAGGATGATGAGTCAGAAGATAATTTTGCTCAACTAGCCCATAGGTCATCACGGGATACTCATCCACAGAATCCGAAACCAGCCTATGATAAGGCAGAACCATTGAGGGTAAACTCACTTCATCCCCCACCACCAGCATCAAAGAAGCCAGTCTACTCTGAAACCAGCATGGTTGATTATCTCAGTGGTGATACATACAAAGCAGAAGAACCCTTTGTGAACTCATTTGCATCTCCTGTTCAAGCTAGCCCTAATCCTACCTCGTCAACCATTCCAACAGCATCTTCCTCACCCCCTCCTCATGCGGTGAGTACCTCGTCACCAATTTTAAGCAGAAAGCCTGTGTATGATGAGCCATCTCCCATGAAACAAACTTCCAAAGAACTGCCACCGGCTCCCTGGGAGACACAATCTACTGGCATCATTCCACCCCCACCTTCAAAGCATAACCAGAGACAGCAGTTTTTTGAGCAACAAGGTGGGCCTCTTTCAAGTGGTGGATCCGGTTCCTCCTATGACAGCTTGTTGGGACAAACTCAGAATCTGTCTCTTAATTCCTCCCCCCAACCAAACAACAGAAGCCTGCAGAAGATGTCCTTTTCAAAGATCTAG 1476 0.4431 MANNASACAERATSDMLIGPDWAINIELCDIINMDPRQAKDALKILKKRLGSKNPKKQLLALFVLETISKNCGESVFQQIVERDILHDMVKIVKKKPDLNVREKILILIDTWQEAFGGPTGVYPQYYAAYNELKSYGVDFPPRDENSVPFFTPPQTQPVVHSTPEYDDVAIQASLQSDTSGLSFEEIQTAKGIADVLTEMLSALNPKDPEGVKEEVIVDLVDQCHSYQERVMVLVNNTTDEQLLGQGLELNDSLQRVLRRHDDIANGTADAGAIGIETSVLPLVNVNHEDDESEDNFAQLAHRSSRDTHPQNPKPAYDKAEPLRVNSLHPPPPASKKPVYSETSMVDYLSGDTYKAEEPFVNSFASPVQASPNPTSSTIPTASSSPPPHAVSTSSPILSRKPVYDEPSPMKQTSKELPPAPWETQSTGIIPPPPSKHNQRQQFFEQQGGPLSSGGSGSSYDSLLGQTQNLSLNSSPQPNNRSLQKMSFSKI 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0509 491 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Lal17g0509 491 MobiDBLite consensus disorder prediction 365 491 - -
Lal17g0509 491 Gene3D - 174 272 IPR038425 -
Lal17g0509 491 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Lal17g0509 491 MobiDBLite consensus disorder prediction 429 491 - -
Lal17g0509 491 SUPERFAMILY ENTH/VHS domain 3 142 IPR008942 -
Lal17g0509 491 Gene3D - 2 151 IPR008942 -
Lal17g0509 491 CDD VHS 10 135 - -
Lal17g0509 491 Pfam VHS domain 8 118 IPR002014 GO:0035091|GO:0043130
Lal17g0509 491 MobiDBLite consensus disorder prediction 365 399 - -
Lal17g0509 491 PANTHER TOM1-LIKE PROTEIN 1 478 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lal17g0509 491 SUPERFAMILY GAT-like domain 145 267 - -
Lal17g0509 491 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Lal17g0509 491 CDD GAT_GGA_like_plant 186 264 - -
Lal17g0509 491 MobiDBLite consensus disorder prediction 301 340 - -
Lal17g0509 491 PIRSF TOM1 1 488 IPR014645 -
Lal17g0509 491 PANTHER TOM1-LIKE PROTEIN 4 1 478 - -
Lal17g0509 491 Pfam GAT domain 193 266 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0509 Lal-Chr17 3523151 3529040 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0509 - - gmx:100792343 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0509 17 3523151 3529040 Lal17g0509 17 3523151 3529040 ECH
Lal17g0509 17 3523151 3529040 Lal21g0536 21 3897244 3904001 LSH