Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0506 ATGCTGTTGCGTCTTTTCAACTCTTCGTTTTTGACAAAAACCCTTTCCAACTACAATCTCTCTAAATCAATATCCATGGCATCTTCAGCTATAGAGTGCAGTTCAAGTTGTGTGCTGGTTTTGTGCGGAAAATCAAACACAGAAAATGAAGCTGCTAAAGCTATTAAGACCAATAACACTATCAAGTTCCCTCAAAGTGAAGATTTTTCTATTGTTTTGCATTCTGAATTGCATAAAACAGTTATGCAACACTCTTTTCAAGTGGATTCCTTCATGAATTCTCTTTCTACCAACACATTTGGAAGGTTTCTCATCTGGTCTCCACAGTTAGATACAACCCATGATGTTGTTTCAAACAACTTTTGTGAGCTTCCTGTTGGTACAGTTTGTGTTGCTGATGTTCAGACCAAAGGACGAGGCCGATCAAAGAATGTCTGGGAGTCTCCTTTAGGCTGCCTCATGTTTTCTTTTACCCTGCAAATGGAGGATGGCCGGGTCGTTCCTTTAGTTCAGTATGTGGTTTCTCTGGCTATCACCGAGGCGGTGAAGGATATCTGTGACAAAAATGGATTACCCTTCCTTGATGTTAAAATCAAGTGGCCAAATGATATTTACTTGAATGGCTTTAAAGTTGGAGGCATTCTATGCACCTCTAAATATACATCAAAGAAGTTCAATGTCAGTGCAGGCATAGGCTTGAATGTCAATAATGAGAAGCCGACAACATCTTTAAATTCAGTTCTAAGAGAATTGTCAGTTGAAGGTTACCACTTTCGAAGAGAAGATGTTCTGGCAGCCTTTTTCAACAAATTTGAGAAATTTTATGAGCTATTTATCAACCAAGGGTTTCAAACCTTGGAGGAACTATATTACAAGACATGGTTGCACAGTGGACAGAGAGTTATCGTACAGGAAAAGAACGACGATAAAGTGGCCGAGCATGCGGTAACTATACAGGGTTTGACATCCTCAGGATATCTGTTGGCAATTGATGATGACAATCAAATGTGTGAGCTCCACCCTGATGGCAATAGCTTTGACTTTTTCAAAGGACTGGTCAGAAGTAAACTCAATTGA 1077 0.3965 MLLRLFNSSFLTKTLSNYNLSKSISMASSAIECSSSCVLVLCGKSNTENEAAKAIKTNNTIKFPQSEDFSIVLHSELHKTVMQHSFQVDSFMNSLSTNTFGRFLIWSPQLDTTHDVVSNNFCELPVGTVCVADVQTKGRGRSKNVWESPLGCLMFSFTLQMEDGRVVPLVQYVVSLAITEAVKDICDKNGLPFLDVKIKWPNDIYLNGFKVGGILCTSKYTSKKFNVSAGIGLNVNNEKPTTSLNSVLRELSVEGYHFRREDVLAAFFNKFEKFYELFINQGFQTLEELYYKTWLHSGQRVIVQEKNDDKVAEHAVTIQGLTSSGYLLAIDDDNQMCELHPDGNSFDFFKGLVRSKLN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0506 358 CDD BPL 103 278 IPR004408 GO:0004077|GO:0036211
Lal21g0506 358 TIGRFAM birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 107 332 IPR004408 GO:0004077|GO:0036211
Lal21g0506 358 Pfam Biotin/lipoate A/B protein ligase family 109 234 IPR004143 GO:0036211
Lal21g0506 358 Pfam Biotin protein ligase C terminal domain 296 351 IPR003142 GO:0036211
Lal21g0506 358 SUPERFAMILY Class II aaRS and biotin synthetases 91 294 IPR045864 -
Lal21g0506 358 Gene3D Bira Bifunctional Protein; Domain 2 92 293 IPR045864 -
Lal21g0506 358 PANTHER BIOTIN PROTEIN LIGASE 29 356 - -
Lal21g0506 358 PANTHER HOLOCARBOXYLASE SYNTHETASE (BIOTIN-(PROPRIONYL-COA-CARBOXYLASE (ATP-HYDROLYSING)) LIGASE) 29 356 - -
Lal21g0506 358 ProSiteProfiles Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile. 89 279 IPR004143 GO:0036211
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0506 Lal-Chr21 3627178 3632624 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0506 K01942 - gmx:100818402 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0506 21 3627178 3632624 Lal21g0506 21 3627178 3632624 ECH
Lal21g0506 21 3627178 3632624 Lal4g0399 4 2766751 2773832 LSH