Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0503 ATGGATTCTCAATCGGGTTTAACACTCGGGTTGAGTTCACACTTGTCAACCCCTTCTGTTCACACGGTTCTGTTCAAACACGAATCATCATCATCAGCATCATCATCGTCACAAACAGAAGAAAACAACCTTGAACAATTACAAGAGGATAATGAAACTATCAAATTCATGGGTCAAAGACTTTCTTTGAAGAGGAATAGAGAGTCACAACACTCATGTTTCCATTCAAAACGTATCCATGTGGATAAGACCAAAGAGGCAAAGAGAAACTGGGTTCGAGATTGGGGGAACAAATCACTTGGAATTGCAGACCCAGAAATCTTCCAAATCATGGAGAAAGAGAAAAGAAGACAATTCAAAGGGATTGAATTAATTGCTTCTGAGAATTTTGTGTGTAAAGCAGTGATGGAAGCACTTGGTAGCGCTTTAACAAATAAATACTCTGAGGGAATGCCAGGTGCAAAATATTATACTGGTAATCACTACATTGATGAAATTGAATTTCTATGTTGTAAGCGTGCGTTGGAGGCTTTCGATCTTGATTCTAACAAATGGGGTGTTAATGTTCAACCTTATTCATGTACTTCTGCTAATTTTGCTGTGTACACTGCACTTTTGCATGCTGGGGGTAGAATTATGGGTTTGGATTCAGCATCTGGTGGACATTTGAGTCATGGGTACTATACTATGGGTGGGAAGAAGGTTTCTGCTGCGTCGATTTTCTTCGAGACTTTGCCTTACAAGGTTAATCATCAAACTGGGTACATTGATTATGAAAGTCTTGAGGATAAAGCACTTGATTTTAGGCCCAAGATACTTATTTGTGGTGGGAGTTCTTATCCTAGAGAATGGGATTACGCTAGGTTCAGACAGATTGCTGATAAATGTGGAGCAGTTTTGATGTGTGACATGGCTCATATCAGTGGTCTTGTGGCTGCGAAGGAAGTAGCTACTCCATTTGATTACTGTGATATTGTTACCTCAACAACCCACAAAAGTCTCCGAGGTCCAAGAGGAGGTATCATCTTTTACAGAAGAGGGCCAAAACCAAGGAAGCAAGGCTTTGTTCTTAGTCATGGAGACAATAATAATTACAATTTTGAGGAGAAGATAAACTTTGCTGTATACCCATCATTACAAGGAGGTCCTCACAACAATCACATTGCTGCTCTTGCCGTGGCTTTAAAACAGGTTGCATCTCCAGATTATAAAGCATACATGCAGCAGGTGAAGAAAAATGCACAGGCATTAGCATCTTCCCTGTTGAAAAGAAACTGCAGATTGGTCACTGATGGGACTGATAATCATCTGTTGCTCTGGGATCTGACTGCAGGTGGCTTAATAGACAGAAACTATGAGAAGGTTTGTGAGGCGTGCCACATCACTCTCAACAAATGCGCCATTTATGGTTCTATTTCTACTGGTGGAGTAAGAATTGGCACTCCTGCAATGACATCAAGAGGTTGTGTGGAAGAAGATTTTGAGACCATAGCTGATTTTCTTCTGAGGGCAGCTCAGATTACAAGTATTGTACAGAGGGGTCATGGTAAATCATCCAAAGACTTTCTCAGGGGTCTTGAGAATAACGAAGACATTTCTGAACTCAGAAACCGTGTTGAAACATTTGCTTCCCAGTTTGCAATGCCAGGATTCCATATTTGA 1662 0.4073 MDSQSGLTLGLSSHLSTPSVHTVLFKHESSSSASSSSQTEENNLEQLQEDNETIKFMGQRLSLKRNRESQHSCFHSKRIHVDKTKEAKRNWVRDWGNKSLGIADPEIFQIMEKEKRRQFKGIELIASENFVCKAVMEALGSALTNKYSEGMPGAKYYTGNHYIDEIEFLCCKRALEAFDLDSNKWGVNVQPYSCTSANFAVYTALLHAGGRIMGLDSASGGHLSHGYYTMGGKKVSAASIFFETLPYKVNHQTGYIDYESLEDKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKEVATPFDYCDIVTSTTHKSLRGPRGGIIFYRRGPKPRKQGFVLSHGDNNNYNFEEKINFAVYPSLQGGPHNNHIAALAVALKQVASPDYKAYMQQVKKNAQALASSLLKRNCRLVTDGTDNHLLLWDLTAGGLIDRNYEKVCEACHITLNKCAIYGSISTGGVRIGTPAMTSRGCVEEDFETIADFLLRAAQITSIVQRGHGKSSKDFLRGLENNEDISELRNRVETFASQFAMPGFHI 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0503 553 Gene3D - 129 408 IPR015421 GO:0003824
Lal21g0503 553 CDD SHMT 104 542 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lal21g0503 553 SUPERFAMILY PLP-dependent transferases 95 551 IPR015424 -
Lal21g0503 553 ProSiteProfiles Cytochrome c family profile. 440 543 IPR009056 GO:0009055|GO:0020037
Lal21g0503 553 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 55 552 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lal21g0503 553 Pfam Serine hydroxymethyltransferase 103 500 IPR039429 -
Lal21g0503 553 Gene3D Aspartate Aminotransferase, domain 1 104 549 IPR015422 GO:0003824
Lal21g0503 553 MobiDBLite consensus disorder prediction 26 50 - -
Lal21g0503 553 Hamap Serine hydroxymethyltransferase [glyA]. 99 550 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lal21g0503 553 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 324 340 IPR019798 GO:0030170
Lal21g0503 553 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 55 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0503 Lal-Chr21 3587210 3591462 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0503 K00600 - gmx:100776419 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0503 21 3587210 3591462 Lal21g0503 21 3587210 3591462 ECH
Lal17g0444 17 3017986 3022433 Lal21g0503 21 3587210 3591462 LSH