Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0444 ATGGATTCTAAATCGGGTTTAACTCTGGGGTTGAGTTCACACATGTCAACCCCATCAACCCCTTCTGTTCACACGGTTCTGTTCAAGCGTGAATCATCAGCATCATCACATTCAGAAGAAAACAACTTTGAACAATTACAAGAGGATAGTGAAACTATCAATTTCATGGGTCAAGGTCTTTCTTTGAAGAGAAGCATAGAGTCACAACAATCATGTTTCCCTTCAAAACGTGTCCATGTGGAAAAGACTATGGAGGCAAAGAGAGATTGGGTTCAAGGTTGGGGGAACCAACCACTTGCAATTGCAGATCCTGAAATCTTCAAAATCATGGAGAAAGAGAAAAGAAGACAATTCAAAGGAATTGAGTTAATTGCTTCTGAGAATTTTGTGTGCAAAGCAGTGATGGAAGCACTAGGTAGCCCTTTAACTAATAAGTACTCTGAGGGAATGCCAGGTGCAAAGTACTATACTGGTAATCACTACATTGATCAAATTGAGTTTTTATGTTGTAAGCGTGCATTGGAGGCTTTTGACCTTGATTCTCAGAAATGGGGTGTTAATGTTCAACCTTATTCATGTACTTCTGCTAATTTTGCTGTATACACTGCACTTTTGCATGCTGGGGATAGGATTATGGGTTTGGATTCACCATCTGGTGGACATTTGAGTCATGGGTATTATACTATGGGTGGGAAGAAGGTTTCGGCTGCTTCCATTTTCTTTGAGACTTTGCCTTACAAGGTTAATCCTCAAACTGGGTACATTGATTATGAAAAGCTTGAGGATAAAGCACTCGATTTTAGGCCCAAGATTCTTATTTGTGGCGGGAGTTCTTATCCTAGAGAATGGGATTATGCCAGGTTCAGGCAGATTGCTGATAAATGTGGTGCAGTTTTGATGTGTGACATGGCTCATATCAGTGGTCTTGTGGCTGCCAAGGAAGCAGCTAATCCCTTTGATTACTGTGATATCATTACCTCAACAACCCACAAAAGCCTCAGAGGTCCAAGGGGTGGTATCATCTTTTATAGAAGAGGGCCAAAACCAAGGAAGCAAGGGTTTGTTCTTAATCACGGAAACAATAGTAATTATGATTTTGAGGAGAAGATTAACTTTGCTGTATATCCATCATTACAAGGAGGTCCTCACAACAATCACATTGCTGCTCTTGCCATTGCTTTAAAAGAAGTCGCAACTCCAAATTACAAAGCGTACATGCAGCAAGTGAAGAAAAATGCACAGGCATTAGCATCTGCCCTATTGAAAAGAAAATGCAGATTGGTGACTGATGGGACTGACAATCATCTCTTGCTCTGGGATCTAACTGCACTTGGCTTACTAGACAGAAACTATGAGAAGGTCTGTGAGGCGTGTCACATCACTCTCAACAAATGTGCCATTTATGGTACTATTTCTACTGGGGGAGTTAGAATTGGCACTCCTGCAATGACATCAAGAGGCTGTGTAGAGGAAGATTTTGAGACCATAGCTGATTTTCTTATGAGGGCAGCTCAGATTACCAGCATTGTACAGAGGGAACATGGAAAATCAATCAAAGACTTTCTCAAGGGTCTTCAGAATAACAAAGATCTTTGTGAACTCAGAAACAGGGTTGAAACATTTGCTTCTCAGTTTGCAATGCCAGGGTTCGATATTTGA 1659 0.4093 MDSKSGLTLGLSSHMSTPSTPSVHTVLFKRESSASSHSEENNFEQLQEDSETINFMGQGLSLKRSIESQQSCFPSKRVHVEKTMEAKRDWVQGWGNQPLAIADPEIFKIMEKEKRRQFKGIELIASENFVCKAVMEALGSPLTNKYSEGMPGAKYYTGNHYIDQIEFLCCKRALEAFDLDSQKWGVNVQPYSCTSANFAVYTALLHAGDRIMGLDSPSGGHLSHGYYTMGGKKVSAASIFFETLPYKVNPQTGYIDYEKLEDKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKEAANPFDYCDIITSTTHKSLRGPRGGIIFYRRGPKPRKQGFVLNHGNNSNYDFEEKINFAVYPSLQGGPHNNHIAALAIALKEVATPNYKAYMQQVKKNAQALASALLKRKCRLVTDGTDNHLLLWDLTALGLLDRNYEKVCEACHITLNKCAIYGTISTGGVRIGTPAMTSRGCVEEDFETIADFLMRAAQITSIVQREHGKSIKDFLKGLQNNKDLCELRNRVETFASQFAMPGFDI 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0444 552 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 323 339 IPR019798 GO:0030170
Lal17g0444 552 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 54 552 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lal17g0444 552 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 54 552 - -
Lal17g0444 552 SUPERFAMILY PLP-dependent transferases 93 551 IPR015424 -
Lal17g0444 552 Gene3D - 128 407 IPR015421 GO:0003824
Lal17g0444 552 Pfam Serine hydroxymethyltransferase 101 499 IPR039429 -
Lal17g0444 552 CDD SHMT 103 541 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lal17g0444 552 MobiDBLite consensus disorder prediction 1 23 - -
Lal17g0444 552 Gene3D Aspartate Aminotransferase, domain 1 103 548 IPR015422 GO:0003824
Lal17g0444 552 Hamap Serine hydroxymethyltransferase [glyA]. 98 549 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0444 Lal-Chr17 3017986 3022433 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0444 K00600 - gmx:100793208 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0444 17 3017986 3022433 Lal17g0444 17 3017986 3022433 ECH
Lal17g0444 17 3017986 3022433 Lal21g0503 21 3587210 3591462 LSH