LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal21g0426	ATGGCGGTTTCCGAGAGTCTCAACGGTGGCGCTTCTACATCGCCGCCTCCACCGACACCAGAATACGGGATCACAAAGCCTATCTCTCTATCCGGTCCCACCGCTGCTGATTTCAACCGTAATCTAGAATTGGAGAAGTTATTGGTTGATTCGGGGCTTTATGAGAGTGATGAAGAAACTGCGACCAGACAAGAGGTTCTTCACCGCCTTGACCAGGTTGTAAAAAGCTGGGTGAAGCAGTTGACGCGCATGCGAGGCTACACAGAACAGATGGTTGAGGATGCAAATGCTGTCATTTTCACTTTTGGCTCTTATCGATTAGGGGTGCATGGGCCTGGAGCTGACATAGACACTTTGTGTGTTGGTCCTTCTTATGTGAATCGAGAGGAAGACTTCTTTATGATTTTGCATAACATCCTTGCTGAAATGGAAGACGTTACTGAACTTCATCCAGTTCCTGATGCGCATGTCCCAGTTATGAAATTCAAGTTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCCCTTTTGGTTGTCCCAGAAATGGTTCTGTATTTGAAACACACTTATCCACAGGACCTGGATATCTCAGATGGTTCCGTGCTGCATGATGTTGATGAGCCAACTGTTCGAAGTCTTAATGGCTGCCGCGTGGCAGATCAAATTCTTAAACTTGTTCCAAATGTTGAGCATTTCCGAAGTGCACTGAGATGTTTAAAGTTTTGGGCCAAAAGGCGTGGTGTTTATTCAAATGTTACTGGATTCCTCGGCGGTGTAAATTGGGCTCTTTTGGTTGCTCGAGTTTGTCAGCTTTACCCAAATGCAATCCCTAGTATGTTGGTCTCCCGATTCTTCAGGGTCTATACACAGTGGCGGTGGCCTAATCCTGTAATGCTATGCTCTATAGAAGAAAACGAATCGGGTTTCCCTATATGGGATCCTCGTAGAAACCCCCGGGATAGATTTCACATCATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCCAGCTACAATGTCTCAGCAAGCACTCTTCGTGTTATGATGGAACAGCTACACCATGGCAACAGGATCTGTGACGAAATTGAGCTTAACAAAGCCCAGTGGAGTACACTTTTCCAGCCATATATCTTTTTTGATGCCTACAAAAACTATTTACAAGTGGACATAATTGCAATAGACGCTGAAGATTTACTATCGTGGAAGGGTTGGATAGAATCTCGGTTGAGACAGCTTACCCTCAAGATAGAGCGGGATACGAATGGGATATTGCAGTGTCATCCTTATCCTCACGAGTATGTGGATACATCAAAGCCTTGTGCACATTCTGCATTTTTCATGGGCTTGCAAAGAAAAGAAGGGGTAAGAGGTCAAGAGGGCCAGCAATTTGATATACGTGGAACAGTCGACGAATTCAGACAAGAAATAAATATGTATGCATATTGGAAGCCAGGGATGGAAATTTATGTTTCTCATGTTCGTCGGAAGCAGCTCCCTGCATTTGTTTTTCCCGAAGGTTATAAACGTACTCGGATTCCAAGGCATATGAGGCACTCAGCTGAAAAAGCAGACGAGGATGCCACAAGGTGCTATTCTGGGTCTACTGAAAGGTGCATCAAGAGGAAAAATGATGCTGAAATGATGGATGTGAAGCCAAGAAAACCAGAAAAACGAGCCTCTATTAGCCCACAGAGGCTAGAGTGTTTTTCTCCTGAAAGTTGTAGCAGTAGATCAGGCGGTACATCTCAAATGAGTATTGATTGTATTGAAGGGGTGAAACTAGATGGTTCAACAATGAAAGATTCTGACAGCAATTGTCAAATTAAGTCATCTGATGGACTCGTAAGATGTCGAATAAGTGCTGAAAGACTTGACATGCAGATTACTGAAACAGGTGTTGTTGACTCCACAATTTGTAGGCTGAAATCAAGGAGTCCAGAAGTTCGGAATGAGAGTGGAGTCAACGGGAACAAAGCTCAGGATCTGGATTTAGACTGCTTGGAGGGTGTAGAAATTGCATTTACCAAAACCTTTACAAACTGTAAGGAGGGTGCTCTTGATATGGATCAACCACTAGACAAAGCTGTGCCAGCACCTAGAACCTCAATTGCAAGATTAGAAACTGTTGTGGATGGAGTGATAAAATTGCAAATCTGGGAGGTAGTGAGAGTCAGCGGACTTTGCCGGATGTTTGTGTGGCAGATCGAGATCAGTTCTGAGGAGTGGCCAGATGTCGACGAGACGAGGCCAGGTCAGATTCTTTGCAGGAGCTAG	2283	0.4433	MAVSESLNGGASTSPPPPTPEYGITKPISLSGPTAADFNRNLELEKLLVDSGLYESDEETATRQEVLHRLDQVVKSWVKQLTRMRGYTEQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFMILHNILAEMEDVTELHPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEMVLYLKHTYPQDLDISDGSVLHDVDEPTVRSLNGCRVADQILKLVPNVEHFRSALRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENESGFPIWDPRRNPRDRFHIMPIITPAYPCMNSSYNVSASTLRVMMEQLHHGNRICDEIELNKAQWSTLFQPYIFFDAYKNYLQVDIIAIDAEDLLSWKGWIESRLRQLTLKIERDTNGILQCHPYPHEYVDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYAYWKPGMEIYVSHVRRKQLPAFVFPEGYKRTRIPRHMRHSAEKADEDATRCYSGSTERCIKRKNDAEMMDVKPRKPEKRASISPQRLECFSPESCSSRSGGTSQMSIDCIEGVKLDGSTMKDSDSNCQIKSSDGLVRCRISAERLDMQITETGVVDSTICRLKSRSPEVRNESGVNGNKAQDLDLDCLEGVEIAFTKTFTNCKEGALDMDQPLDKAVPAPRTSIARLETVVDGVIKLQIWEVVRVSGLCRMFVWQIEISSEEWPDVDETRPGQILCRS	760

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal21g0426	760	Pfam	Poly(A) polymerase predicted RNA binding domain	443	513	IPR007010	GO:0003723\|GO:0043631
	Lal21g0426	760	Pfam	Poly(A) polymerase predicted RNA binding domain	381	439	IPR007010	GO:0003723\|GO:0043631
	Lal21g0426	760	Pfam	Poly(A) polymerase central domain	23	377	IPR007012	GO:0004652\|GO:0043631
	Lal21g0426	760	PANTHER	NUCLEAR POLY(A) POLYMERASE 4	13	579	-	-
	Lal21g0426	760	SUPERFAMILY	PAP/OAS1 substrate-binding domain	229	378	-	-
	Lal21g0426	760	MobiDBLite	consensus disorder prediction	1	28	-	-
	Lal21g0426	760	Gene3D	-	23	376	-	-
	Lal21g0426	760	CDD	NT_PAP_TUTase	63	188	-	-
	Lal21g0426	760	SUPERFAMILY	Nucleotidyltransferase	19	227	IPR043519	-
	Lal21g0426	760	Gene3D	Beta Polymerase, domain 2	55	222	IPR043519	-
	Lal21g0426	760	Pfam	Nucleotidyltransferase domain	93	172	IPR002934	GO:0016779
	Lal21g0426	760	SUPERFAMILY	PAP/Archaeal CCA-adding enzyme, C-terminal domain	381	507	IPR011068	GO:0003723\|GO:0016779\|GO:0031123
	Lal21g0426	760	PANTHER	POLY A POLYMERASE	13	579	-	-
	Lal21g0426	760	Gene3D	Poly(A) polymerase predicted RNA binding domain	381	496	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal21g0426	Lal-Chr21	2945977	2952378	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal21g0426	K14376		-	gmx:100802620	1123.61

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal17g0333	17	2115353	2120566	Lal21g0426	21	2945977	2952378	LSH