Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0333 ATGGCGGTTTCCGATAGTCCCAACGGTGGCGCTTTTACACCACCGCCGCCACCTACACCTGAATACGGGATCACGAAGCCTATCTCTCTCGCCGGTCCCACCGACGCTGATTTCAACCGTAACCTAGAATTGGAGAAGTTCTTGGTTGATTCGGGGCTTTACGAGAGCGATGAAGAAACTGCAAACAGACAAGAGGTTCTTCGCCGCCTTGATCAGGTTGTAAAAAGCTGGGTGAAGCAGTTGACACGCCTGCGAGGCTACACAGATCAGATGGTTGAGGATGCAAATGCTGTCATTTTCACTTTTGGTTCTTATCGACTAGGGGTGCATGGGCCTGGAGCGGACATAGACACTTTGTGTGTTGGTCCTTCTTATGTGAATCGAGAGGAAGACTTTTTTATGGTTTTGCAGAACATCCTCGCTGAAATGGAAGAAGTTACTGAACTTCATCCAGTTCCTGATGCACATGTCCCAGTAATGAAATTCAAGTTCCAGGGAATATCTATAGATTTGCTGTATGCAAGCATATCTCATTTGGTTGTCCCAAAAGACCTGGATATCTCAGATGGTTCTGTGCTGCATGATGTTGATGAGCCAACTGTTCGAAGTCTTAATGGCTGCCGTGTGGCAGATCAAATTCTTAAACTTGTTCCAAATGTTGAGGTTACTGGATTCCTTGGCGGTGTAAATTGGGCCCTTTTGGTTGCTCGAGTTTGCCAGCTTTACCCAAATGCAATCCCTAGTATGTTGGTCACTCGATTCTTCAGGGTCTATACACAGTGGCGGTGGCCTAACCCTGTAATGCTATGCTCTATTGAAGAAAACGAACTGGGTTTCCCCATATGGGATCCTCGTAGAAACCCTCGAGACAGATTTCACATTATGCCCATAATTACTCCTGCATACCCTTGCATGAATTCCAGTTACAATGTCTCAGCAAGCACTCTTCGTGTTATGGTGGAACAGTTACGCTATGGCAACAGGATCTGTGATGAAATTGAGCTTAACAAAGCTCAGTGGAGTGCACTTTTCCAGCCATATCTCTTTTTTGAGGCGTACAAAAACTATTTACAAGTAGACATAATTGCAGTAGACGCTGATGATTTACTACCGTGGAAGGGTTGGATAGAATCTCGGTTGAGACAGCTTACCCTGAAGATAGAACGGGATACGAATGGAATATTGCAGTGTCATCCTTATCCTCATGAGTATGCAGATACATTGAAGCCTTGTGCACATTCTTCATTTTTCATGGGCTTGCAAAGAAAAGAGGGGGTAAGAGGTCAAGAAGGCCAGCAATTTGATATACGTGGAACAGTTGATGAATTCAGACATGAAATAAATATGTATGCATATTGGAAGCCAGGGATGGAAGTTTATGTTTCTCATGTTCGTCGGAAACAGCTCCCTGCATTTGTTTTTCCAGATGGTTATAGACGTACTCGGATTCCAAGACATATGGGCCATTTAGCTGAAAAAGCAGATGAGAATGCTACAAAGTGCTATTCTGGGTCTACTGAAAGATGCATCAAGAGGAAAAATGACACTGAAATAATGGATGTGAAGCCAAGCAAACCAGAAAAACGAGCCTCTATTAGCCCACAGAGGCTAGAGTGTTTTTCTCCTGAAAGTTGTACCAGTAGATCAGGTGGTACATCTCAAATGAGTATTGATTGTATTGAAGGGGTTAGGTTAGATGGTTCGACAACGAAAGATTCTGACAGCGTTTGTGAAATTAAGTCATCTGATGGTCTCGTAGGAAGTGCAATATGTGCTGAAAGACTTGACTTGCAGATTAGTGAAACAGGTGGTGTTGACTCCACACTTGATAGGCAGAAATCAAGGAGTCCAGAAGTTCAGAATGAGAATGGAGTCAATGGGAATAAAGCTCAGGATCTGGATTTAGATTGCTTGGAGGGTGTAGAATCTGTATCAACTGAAAGCTTGACAAACTGTAAAGAGGGTGCCCTTGATATGGATCAACCACTAGACAAAGCTTATAATTTCACAACAGGGGCTGATCTTTCAGATTATGTACCTAGTGCCAACACCCAGAACCTCAATTGCAAGATCAAGATCCGTTCTGAGGAGTGGGTATTTTCATGGAAAAGAGTATTTCAAAATATCTTGGTGGAAGAAGTGAAGGTTTTGAATCTTCTAATCTCTCTGTTTTGCCATAATAAAGATGAACTAATTTTATAA 2202 0.4296 MAVSDSPNGGAFTPPPPPTPEYGITKPISLAGPTDADFNRNLELEKFLVDSGLYESDEETANRQEVLRRLDQVVKSWVKQLTRLRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFMVLQNILAEMEEVTELHPVPDAHVPVMKFKFQGISIDLLYASISHLVVPKDLDISDGSVLHDVDEPTVRSLNGCRVADQILKLVPNVEVTGFLGGVNWALLVARVCQLYPNAIPSMLVTRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHIMPIITPAYPCMNSSYNVSASTLRVMVEQLRYGNRICDEIELNKAQWSALFQPYLFFEAYKNYLQVDIIAVDADDLLPWKGWIESRLRQLTLKIERDTNGILQCHPYPHEYADTLKPCAHSSFFMGLQRKEGVRGQEGQQFDIRGTVDEFRHEINMYAYWKPGMEVYVSHVRRKQLPAFVFPDGYRRTRIPRHMGHLAEKADENATKCYSGSTERCIKRKNDTEIMDVKPSKPEKRASISPQRLECFSPESCTSRSGGTSQMSIDCIEGVRLDGSTTKDSDSVCEIKSSDGLVGSAICAERLDLQISETGGVDSTLDRQKSRSPEVQNENGVNGNKAQDLDLDCLEGVESVSTESLTNCKEGALDMDQPLDKAYNFTTGADLSDYVPSANTQNLNCKIKIRSEEWVFSWKRVFQNILVEEVKVLNLLISLFCHNKDELIL 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0333 733 Pfam Poly(A) polymerase central domain 23 221 IPR007012 GO:0004652|GO:0043631
Lal17g0333 733 Pfam Poly(A) polymerase central domain 222 345 IPR007012 GO:0004652|GO:0043631
Lal17g0333 733 Gene3D - 187 346 - -
Lal17g0333 733 Pfam Nucleotidyltransferase domain 93 172 IPR002934 GO:0016779
Lal17g0333 733 SUPERFAMILY PAP/OAS1 substrate-binding domain 222 346 - -
Lal17g0333 733 CDD NT_PAP_TUTase 62 217 - -
Lal17g0333 733 SUPERFAMILY Nucleotidyltransferase 19 216 IPR043519 -
Lal17g0333 733 PANTHER POLY A POLYMERASE 2 544 - -
Lal17g0333 733 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 349 474 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lal17g0333 733 Pfam Poly(A) polymerase predicted RNA binding domain 349 407 IPR007010 GO:0003723|GO:0043631
Lal17g0333 733 Gene3D Poly(A) polymerase predicted RNA binding domain 349 464 - -
Lal17g0333 733 Gene3D Beta Polymerase, domain 2 55 180 IPR043519 -
Lal17g0333 733 PANTHER NUCLEAR POLY(A) POLYMERASE 4 2 544 - -
Lal17g0333 733 MobiDBLite consensus disorder prediction 603 630 - -
Lal17g0333 733 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0333 Lal-Chr17 2115353 2120566 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0333 K14376 - gmx:100802620 1130.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0333 17 2115353 2120566 Lal21g0426 21 2945977 2952378 LSH