Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0409 ATGCAGGCTTCGCGGGCAAGGTTGTTTAAGGAGTACAAAGAGGTGCAACGAGAGAAATCGGCGGATCCTGATATTACTCTAGTCTGTGATGATTCTAACATTTTTAAATGGAATGCCCTTATCAAGGGACCCTCGGAGACTCCTTATGAGGGAGGTGTTTTTCAGCTTGCCTTTTCTGTTCCAGAGCAGTATCCTTTACAACCGCCTCAAGTCCGATTTTTGACTAAAATATTTCACCCAAATGTGCATTTTAAGACAGGGGAGATTTGTCTTGATATCTTGAAAAATGCTTGGAGCCCAGCTTGGACTCTTCAGTCTGTCTGTAGGGCTATAATTGCTTTGATGGCCCATCCAGAACCTGACAGCCCACTAAATTGTGATTCAGGTAATCTTCTGCGTTCAGGTGATGTTAGAGGGTTCCAGTCCATGGCAAGAATGTACACGAGACTTGCTGCAATGCCAAAGAAAGGTTGA 474 0.443 MQASRARLFKEYKEVQREKSADPDITLVCDDSNIFKWNALIKGPSETPYEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFQSMARMYTRLAAMPKKG 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0409 157 CDD UBCc 7 148 IPR000608 -
Lal21g0409 157 SMART ubc_7 6 153 - -
Lal21g0409 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 3 153 IPR000608 -
Lal21g0409 157 PANTHER BNAA09G04490D PROTEIN 3 157 - -
Lal21g0409 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 94 IPR023313 -
Lal21g0409 157 SUPERFAMILY UBC-like 4 153 IPR016135 -
Lal21g0409 157 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Lal21g0409 157 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 157 - -
Lal21g0409 157 Pfam Ubiquitin-conjugating enzyme 7 147 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0409 Lal-Chr21 2838210 2841293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0409 7 123 Miscellaneous Gene Families AT3G17000 35.537 1.21e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0409 K10689 - cit:102618324 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0409 21 2838210 2841293 Lal21g0409 21 2838210 2841293 ECH
Lal17g0304 17 1894947 1904772 Lal21g0409 21 2838210 2841293 LSH