Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0304 ATGGTGAATCCGTTGGTGGCGCGTGCCACGAGCGACATGCTCATCGGTCCTGATTGGGCTTTGAATATCGAGATCTGTGACGTACTCAATCGTGACCCTGGGCAAGCCAAGGATGTTGTTAAAGGTATAAAGAAGAAGATTGGAAGTAGAAATTCTAAAACTCAACTTCTTGCACTAATTTTGCTGGAGACTATCATAAAGAATTGTGGGGACATTGTTCACATGCATGTTGCAGAGAGAGATGTTATTCAGGAGATGGTTAGAATAGTAAAGAAGAAGACCGATCCTCATGTTAGAGAGAAGATACTGACTCTAATAGATACATGGCAAGAAGCTTTTGGAGGGCCAAGGGCAAGATATCCACAGTATTATGCTGCATACCAGGACCTGCTGCATGCTGGGGCAGTATTCCCTCAAAGGTCTGAGCAATCTGCACCTGTATTCACACCGCTACAGACACACCCATTGGCATCTTACCCTCAAAATATACGTGATTCTGATGCTCGTCAGGGCACAACTGAATCCTCTGCAGAGTCGGAGTTTCCAACCCTAAGTTTGACTGAAATTCAGAATGCACGTGGTATTATGGATGTTCTTTCTGAAATGCTCAATGCGATAGATCCTGGCAATAAAGAAGGTCTTAGCCAGGAGGTTATTGTTGATTTGGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTACACCTTGTTAACTCAACTACGGACGAGTCACTGCTTTGCCAAGGACTTTCTCTAAATGATGATCTGCAGCGTCTGCTGGCCAAGCATGAATCCATTTCCTCAGGAACTTCTGCTCAAAATCACACCAAGAAACCAAAGACTGAACCTTCTGGAGCACTTGTAGATGTTGATGGTCCTTTGGTTGATACTGGAAATACTAATAATCAAACTCATGGATCCTCTGCTAGTACTGAAGGAGGGTCCCAAACGTTGAATCAGTTATTGCTACCTGCACCCCCTACATCAAATGGTTCAGCTCTCCCTGCAAATCCCAAATTGGACCTGCTCAGCGGTGACCTGCTGAGTGGTGATGACTATAGCTCACCAAAAACAGAGACTTCACTTGCTCTTGTTCCTGTAGGTGAACAACAGCCAGCCAGTCCTATGTCTCAGCAGAATGCTCTTGTACTTTTTGACATGTTTTCTAATGGTAGCAATGCATCAACTTCTGTCAATGCCCAGCCACCTAATGTTGTTGGCCCAACCAATCCATTAGGCCCCCAGTTTCAACAACATCAATCTTTCATATCTCAAGGTGCATTTTACCCCAACGGGAATGTGCCAAATGGAGGCTCACCTCGGTACGGGCAATCACCATATGCACAAAGCACAGATCCTGCCTGGAATGGTCAGGCTGCGCAGCAGCAACAACCTCCACCAGTTTATGGTACACCAAGTATTGGATCATTGCCACCACCTCCATGGGAAGCTCAACCGACAGACAATGGTAGTCCAGTAGCAGGCAGTCAATATCCACAACCACTGCAATCCACTCAAATGATACAGAATGCTGCATATCCTCAGGGACCTCAAGCAATGGGAAATGACCATGCCGTTGGTATGCATATACAGCCAAATGCTAACAGCCATTTGTCAACAATCAATAACCATGTTGGTCAAAGCAATCAAGTGGGCATGCATCCACAGTATATTCCGGGTGCTGCAGGTCCCTATATGGGAATGGTTCTACAACAAATGCAAAATGGTCCTGTGGCGTCCATGTATCCACAACAGATGTATGGCAACCAATTCACAGGCTATGGCTATGGTCAGCAACCAGGGGTTCAATATGTTGATCAGCAAATGTATGGTCTATCTTTGAGAGATGATAGTGGTCTGAGAAACCCTCACCAGGTATCTACTGCATCTTATGGGCCATCTGGGAAGCCTTCTAAGCCACAGGATAGTTTATTTGGGGACCTTGTTAACATGGCAAAAGTGAAGCCAAAATCTCCTCCTGGCCAAGCTGGTAGCATGGTCTTATATGCTTCGAGGGCAAGGCTTTTCAAGGAGTACAAAGAGGTGCAACGTGAGAAATCAGCTGATCCTGATATTACTCTAGTCTGTGATGATTCTAACATTTTTAAATGGAATGCCCTTATCAAGGGACCCTCAGAGACTCCTTTTGAGGGAGGTGTCTTTCAGCTTGCCTTTTCTGTTCCAGAGCAGTATCCTCTACAACCACCTCAAGTCCGATTTTTGACTAAAATATTTCACCCAAATGTGCATTTTAAGACAGGGGAGATTTGTCTGGATATATTGAAAAATGCATGGAGCCCGGCTTGGACGCTTCAGTCAGTGTGTAGGGCTATAATTGCTTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGAAATCTTCTGCGTTCTGGTGATGTTAGAGGGTATCAGTCCATGGCAAGAATGTACACGAGGCTTGCTGCTATGCCCAAGAAAGGCTGA 2475 0.4545 MVNPLVARATSDMLIGPDWALNIEICDVLNRDPGQAKDVVKGIKKKIGSRNSKTQLLALILLETIIKNCGDIVHMHVAERDVIQEMVRIVKKKTDPHVREKILTLIDTWQEAFGGPRARYPQYYAAYQDLLHAGAVFPQRSEQSAPVFTPLQTHPLASYPQNIRDSDARQGTTESSAESEFPTLSLTEIQNARGIMDVLSEMLNAIDPGNKEGLSQEVIVDLVEQCRTYKQRVVHLVNSTTDESLLCQGLSLNDDLQRLLAKHESISSGTSAQNHTKKPKTEPSGALVDVDGPLVDTGNTNNQTHGSSASTEGGSQTLNQLLLPAPPTSNGSALPANPKLDLLSGDLLSGDDYSSPKTETSLALVPVGEQQPASPMSQQNALVLFDMFSNGSNASTSVNAQPPNVVGPTNPLGPQFQQHQSFISQGAFYPNGNVPNGGSPRYGQSPYAQSTDPAWNGQAAQQQQPPPVYGTPSIGSLPPPPWEAQPTDNGSPVAGSQYPQPLQSTQMIQNAAYPQGPQAMGNDHAVGMHIQPNANSHLSTINNHVGQSNQVGMHPQYIPGAAGPYMGMVLQQMQNGPVASMYPQQMYGNQFTGYGYGQQPGVQYVDQQMYGLSLRDDSGLRNPHQVSTASYGPSGKPSKPQDSLFGDLVNMAKVKPKSPPGQAGSMVLYASRARLFKEYKEVQREKSADPDITLVCDDSNIFKWNALIKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0304 824 Gene3D Ubiquitin Conjugating Enzyme 668 819 IPR016135 -
Lal17g0304 824 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Lal17g0304 824 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Lal17g0304 824 CDD UBCc 674 815 IPR000608 -
Lal17g0304 824 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Lal17g0304 824 SUPERFAMILY UBC-like 668 820 IPR016135 -
Lal17g0304 824 PANTHER TOM1-LIKE PROTEIN 1 659 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lal17g0304 824 SMART ubc_7 673 820 - -
Lal17g0304 824 MobiDBLite consensus disorder prediction 426 499 - -
Lal17g0304 824 MobiDBLite consensus disorder prediction 471 486 - -
Lal17g0304 824 Pfam VHS domain 5 123 IPR002014 GO:0035091|GO:0043130
Lal17g0304 824 PANTHER TARGET OF MYB PROTEIN 1 1 659 - -
Lal17g0304 824 Gene3D - 183 276 IPR038425 -
Lal17g0304 824 MobiDBLite consensus disorder prediction 426 470 - -
Lal17g0304 824 MobiDBLite consensus disorder prediction 620 637 - -
Lal17g0304 824 Gene3D - 1 148 IPR008942 -
Lal17g0304 824 MobiDBLite consensus disorder prediction 295 335 - -
Lal17g0304 824 Pfam Ubiquitin-conjugating enzyme 674 814 IPR000608 -
Lal17g0304 824 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 670 820 IPR000608 -
Lal17g0304 824 SUPERFAMILY ENTH/VHS domain 4 138 IPR008942 -
Lal17g0304 824 MobiDBLite consensus disorder prediction 265 337 - -
Lal17g0304 824 CDD GAT_GGA_like_plant 188 266 - -
Lal17g0304 824 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 745 761 IPR023313 -
Lal17g0304 824 MobiDBLite consensus disorder prediction 618 642 - -
Lal17g0304 824 SUPERFAMILY GAT-like domain 141 269 - -
Lal17g0304 824 CDD VHS 2 130 - -
Lal17g0304 824 MobiDBLite consensus disorder prediction 265 280 - -
Lal17g0304 824 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Lal17g0304 824 MobiDBLite consensus disorder prediction 159 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0304 Lal-Chr17 1894947 1904772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0304 674 790 Miscellaneous Gene Families AT3G17000 36.364 5.24e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0304 - - lang:109328367 1204.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0304 17 1894947 1904772 Lal17g0304 17 1894947 1904772 ECH
Lal17g0304 17 1894947 1904772 Lal21g0409 21 2838210 2841293 LSH