Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0399 TTACAAGTTCAACCCCACTTGTCAATTACCAATCTTTCTGAAGAAGAAGAAGATCTAACCAAAAGTTGCAACATTAAACTATGCCTCCACCTCATCAACAATCGCACCGATCTCCCTCACCTTCCCAACCTTCCGGTAGTTCAAATTTTAGAAACATTATTTCCGAAGAGTGAAGTATCTGATCTGAAATCACAGCTCAGGCAACTTGCTGGAAGCCGAGGTCCAGGCACCGATGATGGGAAGAGGGATCTCTTCAAGAAGGTGATTTCCAATATGACAATAGGTATTGATGTCTCAGCTCTATTTGGTGAGATGGTAATGTGTTCGGCGACATCGGACATTGTTCTTAAGAAAATGTGTTATCTATATGTTGGGAATTATGCAAAGGTTAATCCTGATCTCGCGCTCTTGACGATTAATTTTCTACAACGAGATTGCAAGGATCAGGATCCAATGATAAGGGGGTTAGCTTTGAGGAGTTTGTGTTCGCTCCGAGTAGCGAATTTGGTGGAGTATTTGGTTGGGCCATTAGGGTCTGGGTTGAAGGACAATAATAATTATGTTAGGACTGTGGCAGTTATTGGAGTGTTGAAACTCTATCATATATCAGCCTCAACTTGTATTGATGCAGATTTTCCAACAACCCTGAAGCATTTGTTGCTTAATGACCCGGATGCTCAGGTAGTCGCAAATTGTTTGTCTGCTTTACAAGAGATTTGGACCTTAGAGTCAACCACGTCAGAGGAGGCGGCCAGGGAGAGAGAAACACTGACTAGCAAGCCAGTTGTATATTACCTTCTGAATCGGCAAGTATTCTTTCAACAAATACTTTCTCATGCTCTCATATTTGTTAAGCTTAACTTGGGAACATTGTTTTGCTTGCATAGTTCATGTTTTTTTCCTTCAAGGACCGCACTCATTAAAGAATTTAGTGAATGGGCACAATGTCTTCTGCTGGATTTGGTGACCAAGTACATTCCATCAGATAACAATGAAATATTTGATATAATGAATCTACTTGAAGATAGACTCCAGCATGCAAATGGTGCTGTTGTGTTGGCAACTATTAAACTATTTCTTCATTTGACTTTGTCTATGGCCGATGTTCATCAGCAGGTGTATGAGCGTATTAAAGCCCCTCTCTTAACTCAAGTGAGCTCAGGAAGTCCGGAACAATCTTATGCAATTTTAAGCCATCTACATCTCCTGGTCATGCGTGCACCTCATATATTTGCCTCAGACTACAAACATTTCTATTGCCAGTATAATGAGCCATCTTATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCTGTTGCAAATGAAAGTAACACCTATGAGATAGTGACGGAGTTATGTGAATATGCGGCAAATGTTGACATTCCAATTGCAAGAGAATCAATTCGGGCTGTTGGGAAGATAGCGTTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTACAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGGTGCTTGTGAAAGATCTGCTAAGAAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGGAATATCAGTAGCAAAAATGTCCATGAACCCAAGGCTAAGGCAGCACTTATATGGATGCTGGGGGAATATTCTCAAGACATGCAAGATGCTCCATATGTCTTGGAGGGTTTAGTTGAAAATTGGGATGAGGAGCATTCAGCTGAGGTTCGCTTACATCTTCTTACTGCAGTGATGAAGTGTTTTTTTAAGAGACCGCCTGAGACTCAGAAAGCATTAGGAGCAGCATTGGCTGCTGGTGTTGCTGACTTTGACCAGGATGTTCATGGCAGGGCCTTATTTTATTACAGGCTTCTGCAATATAAAGTATCAATAGCAGAGAGTGTGGTGAACCCTCCAAAGCAAGCAGTTTCAGTATTTGCTAATACTCAGAGCAATGAAATCAAAGATCGCATATTTGATGAATTTAACACTTTGTCTGTTGTGTACCAAAAGCCTTCTTACATGTTCACTGATAAGGAACACCGAGGGACATTTGATTTTTCAGATGAACTTGGAAATCTATCTATTACTGCAGAATCTGGAGATGTTGTTCCAGCTGAGAGAGTGGAAGCAAATGACAAGGATCTACTTCTAAGTACCACAGAAAAAGATGAAGGTAGAGATCCTAGTAGTAATGACTCTGCCTATAATGCTCCTTCCTATGATGGTTCATCGGCCCCTTCTGCGACATCACAACCACTTGCAGATTTGGCATTTTCAAGTACCAGCACACCTGCTCAAGGTCCATCATCTAGTTTGGCAATAGAAGATATGTTTGGTTTAGATTTTTCAGTTGGGACTGCAGCCACACCTTCACCTCCTTCATTGAATCTCAACGCAAAGCCTGCACTGGATCCTGGCACATTTCAGCAGAAATGGCGTCAGCTGCCAATATGTATATCAGAGGAATATTCTCTAAGTCCACAAGGAATTGCATTGTTGACATCTCCTCAGGCACTGCTCCAGCACATGCTAAGTCATTCAATACACTGCATTGCATCTGGTGGTCAGTCTCCGAACCTCAAGTTCTTCTTCTTTGCTCAAAAAGTGGAAGAGGCATCAACGTATCTTGTAGAGTGTATAATCAACACATCGTCAGCCAAGTCACAGATTAAAATAAAAGCCGATGACCAAAGTTCATCCCTGGTGTTTTCAACATTATTCCAATCAGCATTGTCGAAATTTGGTTTGCCTTGA 2754 0.4129 LQVQPHLSITNLSEEEEDLTKSCNIKLCLHLINNRTDLPHLPNLPVVQILETLFPKSEVSDLKSQLRQLAGSRGPGTDDGKRDLFKKVISNMTIGIDVSALFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDQDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNNYVRTVAVIGVLKLYHISASTCIDADFPTTLKHLLLNDPDAQVVANCLSALQEIWTLESTTSEEAARERETLTSKPVVYYLLNRQVFFQQILSHALIFVKLNLGTLFCLHSSCFFPSRTALIKEFSEWAQCLLLDLVTKYIPSDNNEIFDIMNLLEDRLQHANGAVVLATIKLFLHLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAILSHLHLLVMRAPHIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVHEPKAKAALIWMLGEYSQDMQDAPYVLEGLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGVADFDQDVHGRALFYYRLLQYKVSIAESVVNPPKQAVSVFANTQSNEIKDRIFDEFNTLSVVYQKPSYMFTDKEHRGTFDFSDELGNLSITAESGDVVPAERVEANDKDLLLSTTEKDEGRDPSSNDSAYNAPSYDGSSAPSATSQPLADLAFSSTSTPAQGPSSSLAIEDMFGLDFSVGTAATPSPPSLNLNAKPALDPGTFQQKWRQLPICISEEYSLSPQGIALLTSPQALLQHMLSHSIHCIASGGQSPNLKFFFFAQKVEEASTYLVECIINTSSAKSQIKIKADDQSSSLVFSTLFQSALSKFGLP 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0399 917 Pfam Adaptin N terminal region 74 625 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lal21g0399 917 Gene3D - 785 915 IPR012295 -
Lal21g0399 917 PANTHER AP-4 COMPLEX SUBUNIT BETA-1 307 915 - -
Lal21g0399 917 PANTHER AP-4 COMPLEX SUBUNIT BETA-1 57 272 - -
Lal21g0399 917 PIRSF Beta_adaptin 304 917 IPR016342 GO:0015031|GO:0030276
Lal21g0399 917 PIRSF Beta_adaptin 50 281 IPR016342 GO:0015031|GO:0030276
Lal21g0399 917 Pfam Beta2-adaptin appendage, C-terminal sub-domain 800 911 IPR015151 GO:0006886|GO:0016192|GO:0030131
Lal21g0399 917 Gene3D - 53 683 IPR011989 -
Lal21g0399 917 MobiDBLite consensus disorder prediction 730 748 - -
Lal21g0399 917 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 307 915 IPR026739 GO:0016192
Lal21g0399 917 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 57 272 IPR026739 GO:0016192
Lal21g0399 917 MobiDBLite consensus disorder prediction 704 748 - -
Lal21g0399 917 SUPERFAMILY ARM repeat 64 672 IPR016024 -
Lal21g0399 917 MobiDBLite consensus disorder prediction 705 729 - -
Lal21g0399 917 SMART B2_adapt_app_C_2 795 912 IPR015151 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0399 Lal-Chr21 2756020 2762650 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0399 - - gmx:100801153 1449.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0399 21 2756020 2762650 Lal21g0399 21 2756020 2762650 ECH
Lal17g0297 17 1854317 1861591 Lal21g0399 21 2756020 2762650 LSH