Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0297 ATGGCTCCACCTCATCAACAATCTCAACGATCTCCTTCACCTTCTCAACCATCGGGAAAGAGTGAAGTATCCGATCTCAAATCACAGCTCCGGCAACTTGCTGGGAGCCGAGCTCTGGGTGCTGATGATGCTAAGAGGGATCTCTTCAAGAAGGTGATTTCCAACATGACCATAGGTATTGACGTCTCAGCTCTCTTTGGTGAGATGGTAATGTGCTCAGCAACATCGGACATTGTGCTGAAGAAAATGTGCTATCTATATGTTGGGATTTATGCAAAGGTCAATCCTGATCTTGCGCTCTTGACGATTAATTTTCTACAAAGAGATTGCAAGGACGAGGATCCAATGATACGGGGATTAGCTTTGAGAAGTTTGTGTTCGCTCCGAGTGGCAAATTTAGTGGAGTATTTGGTTGGGCCATTAGGTTCTGGGTTGAAGGACAACAATAGTTATGTCAGGACAGTGGCAGTTATTGGGGTGTTGAAACTATATCATATATCAGCTTCCACCTGTATTGATGCAGATTTTCCAGCAACGCTGAAGCATTTGTTGCTTAATGACCCGGATACTCAGGTAGTCACAAATTGTTTGTCTGCTTTACAAGAGATTTGGACCTTAGAGTCAACCACTTCAGAGGAAGCGGCCAGGGAGAGAGAAACTCTTCTTAGCAAGCCAGTTGTATATTACCTTCTGAATCGGCAAGTAATCTTTCAACAAACGGTTTCCTATACTCTGGTATTTGATGAACTCAACTTGGGAGTTGGGAATGCTGTGTGGCATAACATTAAAGAATTTAATGAATGGGCACAATGTCTTGTGCTGGAATTGGTGACCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTACTTGAAGATAGACTCCAGCATGCAAATGGTGCTGTTGTCTTGGCAACTACTAAAATATTTCTACATTTGACTTTGTCCATGGCCGATGTTCATCAGCAGGTGTATGAGCGTATCAAAGCCCCTCTCTTAACTCAAGTGAGCTCAGGAAGTCCAGAACAATCATATGCAATTTTAAGCCATCTACATCTCTTGGTCATGCGTGCACCTTATATATTTGCCTCAGACTACAAACATTTCTATTGCCAGTATAATGAGCCATCTTATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCTGTTGCAAATGAAAGTAACACCTATGAGATAGTGACGGAGCTATGTGAATATGCTGCAAATGTTGACATTCCAATTGCAAGAGAATCAATTCGGGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTGGATCGGCTTCTACAGTTTCTTGAAATGGAAAAGGACTATGTTACTTCTGAAACTCTGGTGCTTGTGAAAGATCTGCTAAGGAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGGAATATCAGTAGCAAAAATGTCCAAGAACCCAAGGCTAAGGCAGCGCTTATATGGATGTTGGGGGAATATTCTCAAGACATGCAAGATGCTCCGTATGTTTTGGAAAGCTTAGTTGAAAATTGGGATGAGGAGCATTCAGCTGAGGTTCGCTTACATCTTCTTACTGCAGTGATGAAGTGTTTCTTTAAGAGGCCGCCTGAGACTCAGAAAGCATTGGGAGCTGCATTGGCTGCTGGTATTGCTGATTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTGAAATGTAAAGTATCAGTGGCGGAGAGTGTGGTGAATCCTCCAAAGCAAGCAGTTTCTGTATTTGCTGATACGCAGAGCAATGAAATCAAAGATCGCATATTTGATGAATTTAACACTTTGTCAGTTGTTTACCAAAAGCCTTCTTACATGTTCACTGATAAGGAACACCGAGGGACATTTGAGTTTTCAGATGAACTTGGAAATCTATCTATTAGTGCAGAACCTAGAGATGCTGTTGTTCCAGCTCAGATAGTGGAGGCAAATGACAAAGATCTACTTCTAAGTACCACAGAAAAAGATGAAGGTAGAGAGCCTGGTATTAATGGCTCTGCCTATAGTGCTCCTTCCTATGATGGTTCATCTGCCCCTTCTGCCACTTCACAACCACTTGCAGATTTGTCATTTTTAAGTACCAGCGCACCTGGTCAAGCTCCATCATCTAGCTTGGAAATTGATGATCTGTTTGGTTTAGATTTTTCAGTTGGGACTGCAGCCACACCTTCACCTCCTTCATTGAATCTCAACCCAAAGGCTGCACTGGATCCTGGCACTTTTCAGCAGAAATGGCGTCAACTGCCAATATCTATATCAGAGGAATCTTCTATAAGTGCACAAGGAGTTGCATTGTTGACATCTCCTCAGACACTCCTCCGGCACATGCAAAGTCATTCAATACACTGCATTGCATCCGGTGGTCAGTCTCCTAACTTAAAGTTCTTTTTCTTTGCTCAAAAAGCGGAAGAAGCTTCATCGTATCTTGTAGAGTGTATAATCAACACATCATCAGCCAAGTCACAAGTTAAAATAAAAGCCGATGACCAAAGTTCATCTCAGGCATTTGCAACCTTATTCCTATCAGCATTGTCCAAATTTGGTTTGCCTTGA 2622 0.4191 MAPPHQQSQRSPSPSQPSGKSEVSDLKSQLRQLAGSRALGADDAKRDLFKKVISNMTIGIDVSALFGEMVMCSATSDIVLKKMCYLYVGIYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRTVAVIGVLKLYHISASTCIDADFPATLKHLLLNDPDTQVVTNCLSALQEIWTLESTTSEEAARERETLLSKPVVYYLLNRQVIFQQTVSYTLVFDELNLGVGNAVWHNIKEFNEWAQCLVLELVTKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATTKIFLHLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAILSHLHLLVMRAPYIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSETLVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMQDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGIADFHQDVHDRALFYYRLLKCKVSVAESVVNPPKQAVSVFADTQSNEIKDRIFDEFNTLSVVYQKPSYMFTDKEHRGTFEFSDELGNLSISAEPRDAVVPAQIVEANDKDLLLSTTEKDEGREPGINGSAYSAPSYDGSSAPSATSQPLADLSFLSTSAPGQAPSSSLEIDDLFGLDFSVGTAATPSPPSLNLNPKAALDPGTFQQKWRQLPISISEESSISAQGVALLTSPQTLLRHMQSHSIHCIASGGQSPNLKFFFFAQKAEEASSYLVECIINTSSAKSQVKIKADDQSSSQAFATLFLSALSKFGLP 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0297 873 SUPERFAMILY ARM repeat 28 627 IPR016024 -
Lal17g0297 873 Pfam Beta2-adaptin appendage, C-terminal sub-domain 754 867 IPR015151 GO:0006886|GO:0016192|GO:0030131
Lal17g0297 873 MobiDBLite consensus disorder prediction 670 704 - -
Lal17g0297 873 Gene3D - 741 871 IPR012295 -
Lal17g0297 873 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 260 871 IPR026739 GO:0016192
Lal17g0297 873 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 17 235 IPR026739 GO:0016192
Lal17g0297 873 MobiDBLite consensus disorder prediction 1 27 - -
Lal17g0297 873 PIRSF Beta_adaptin 249 873 IPR016342 GO:0015031|GO:0030276
Lal17g0297 873 PIRSF Beta_adaptin 11 246 IPR016342 GO:0015031|GO:0030276
Lal17g0297 873 Pfam Adaptin N terminal region 36 580 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lal17g0297 873 Gene3D - 15 638 IPR011989 -
Lal17g0297 873 PANTHER AP-4 COMPLEX SUBUNIT BETA-1 17 235 - -
Lal17g0297 873 PANTHER AP-4 COMPLEX SUBUNIT BETA-1 260 871 - -
Lal17g0297 873 SMART B2_adapt_app_C_2 751 868 IPR015151 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0297 Lal-Chr17 1854317 1861591 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0297 - - gmx:100801153 1468.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0297 17 1854317 1861591 Lal17g0297 17 1854317 1861591 ECH
Lal17g0297 17 1854317 1861591 Lal21g0399 21 2756020 2762650 LSH