Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0374 ATGGAACCATTATCGTCTTCGACAATAGCACAACAAACATGGGAACTCGAAAACAACATAATCCCAATAGACACTCCTTCTTCAACCACCAACGCCGACGATTCCATCTTCCACTACGATGAAGCTTCTCAGAACCAGTTCCACCGTGAAAGGCCTTGGATCAACGATCCTCACTATTTCAAACGCGTCAAGATCTCCGCACTCGCTCTCCTCAAGATGGTTGTTCACGCGCGCTCTGGTGGCACCATTGAAGTTATGGGTTTAATGCAAGGGAAAACAGATCAAGATTCAATTATTGTCATGGACGCTTTTGCCCTTCCCGTTGAAGGTACTGAGACTCGTGTTAATGCTCAAGCTGATGCGTATGAGTACATGGTTGATTATTCCCAGACCAATAAGCAGGCAGGGCGGTTGGAGAATGTCGTAGGATGGTATCATTCTCATCCTGGATATGGATGCTGGCTCTCTGGTATAGACGTGTCTACACAGATGCTGAACCAGCAGTTTCAGGAGCCCTTTCTGGCTGTTGTGATTGACCCAACCAGGACTGTTTCTGCTGGAAAAGTTGAGATTGGGGCATTCAGAACCTACCCTGATGGTTATAAGCCTCCGGATGAACCTATTTCTGAGTACCAAACCATACCTCTCAATAAGATTGAAGACTTCGGTGTCCACTGCAAACAGTATTATTCTTTGGATATCACTTACTTCAAGTCTTCCCTTGACTCACACCTGTTGGATCTGCTATGGAACAAGTATTGGGTGAATACACTATCATCTTCTCCTCTGTTGGGTAATGGAGACTATGTTGCTGGACAAATCTCAGATTTAGCTGAAAAATTAGAACAAGCAGAGAATCAGTTGGCGCACTCTCGCTTTGGATCATTAATAGCTCCGTCTCCTAGAAAGAAAGAAGAAGAATCTCCACTTGCTAAGATTACTCGTGATAGTGCAAAAATAACCGTCGAGCAAGTGCATGGTCTGATGTCACAGGTAATCAAGGACATCCTGTTCAATTCTGTTCATCAAACAAACAAGTCTCCCACAGAAACATCTGACCCTGAACCAATGATTGAGAGCTGA 1083 0.4451 MEPLSSSTIAQQTWELENNIIPIDTPSSTTNADDSIFHYDEASQNQFHRERPWINDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDQDSIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPDGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGSLIAPSPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQTNKSPTETSDPEPMIES 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0374 360 PANTHER BNAC07G13420D PROTEIN 26 351 IPR037740 GO:0004222|GO:0008180
Lal21g0374 360 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 26 351 - -
Lal21g0374 360 SMART pad1_6 62 199 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lal21g0374 360 ProSiteProfiles MPN domain profile. 63 200 IPR037518 -
Lal21g0374 360 SUPERFAMILY JAB1/MPN domain 62 200 - -
Lal21g0374 360 Pfam Cop9 signalosome subunit 5 C-terminal domain 259 339 IPR040961 -
Lal21g0374 360 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 60 171 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lal21g0374 360 Gene3D Cytidine Deaminase, domain 2 3 265 - -
Lal21g0374 360 CDD MPN_RPN11_CSN5 52 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0374 Lal-Chr21 2526675 2530988 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0374 K09613 - gmx:100817371 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0269 17 1672752 1680916 Lal21g0374 21 2526675 2530988 LSH