Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0269 ATGATGGAACCTTTGTCATCTTCATCATCTTCTGCAATAGCGCAACAAACATGGGAACTTGAAAACAACATCATCCCAATGGAAACTCCTTCTTCAACCACCAACGCCGATGACTCCATCTTCCACTACGACGAAGCCTCTCAGAACGAATTCCATCGTGAGAAGCCTTGGATCAACGATCCTCACTACTTCAAACGCGTTAAGATCTCCGCACTCGCTCTCCTCAAGATGGTTGTTCACGCGCGTTCTGGTGGAACCATTGAAGTCATGGGTTTAATGCAAGGGAAGACCGATAAGGATGCCATCATTGTTATGGACGCTTTTGCCCTTCCCGTTGAGGGTACTGAGACACGTGTTAATGCCCAAGCTGATGCATATGAATACATGGTTGATTATTCACAGACCAATAAGCAGGCTGGGCGGTTGGAAAATGTTGTGGGGTGGTATCATTCGCATCCTGGTTACGGATGCTGGCTTTCTGGTATAGACGTGTCTACCCAGATGCTGAACCAACAGTTTCAGGAGCCCTTTCTGGCTGTTGTGATTGACCCAACCAGGACTGTTTCTGCTGGAAAGGTTGAGATCGGGGCATTTAGAACCTACCCTGATGGTTATAAGCCTCCGGACGAGCCTATTTCTGAGTACCAAACCATACCTCTCAACAAGATTGAAGACTTTGGTGTCCACTGTAAACAGTATTATTCTTTGGATATCACGTACTTCAAGTCTTCCCTTGACTCACACCTGTTGGATCTGTTGTGGAACAAATATTGGGTGAATACACTATCATCTTCTCCTCTGTTGGGTAATGGAGACTATGTTGCTGGACAAATCTCGGATTTAGCTGAAAAGCTAGAACAAGCAGAGAATCAGTTGGCGCACTCACGCTTTGGGTCATTAATATCTCCTGCTCCTAGAAAGAAAGAGGAAGAATCTCCACTTGCTAAGATTACTCGTGATAGTGCAAAAATTACTGTGGAACAGGTTCATGGTCTTATGTCACAGGTAATCAAGGACATTCTGTTCAATTCTTCTCATCAAACAAACAAGTCTCGCGCAGAAACATCTGGCCCTGAACCAATGATTGAGAGCTGA 1095 0.4511 MMEPLSSSSSSAIAQQTWELENNIIPMETPSSTTNADDSIFHYDEASQNEFHREKPWINDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDKDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPDGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGSLISPAPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSSHQTNKSRAETSGPEPMIES 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0269 364 SUPERFAMILY JAB1/MPN domain 66 204 - -
Lal17g0269 364 SMART pad1_6 66 203 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lal17g0269 364 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 64 175 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lal17g0269 364 Pfam Cop9 signalosome subunit 5 C-terminal domain 263 343 IPR040961 -
Lal17g0269 364 ProSiteProfiles MPN domain profile. 67 204 IPR037518 -
Lal17g0269 364 PANTHER BNAC07G13420D PROTEIN 30 356 IPR037740 GO:0004222|GO:0008180
Lal17g0269 364 Gene3D Cytidine Deaminase, domain 2 6 269 - -
Lal17g0269 364 CDD MPN_RPN11_CSN5 56 328 - -
Lal17g0269 364 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 30 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0269 Lal-Chr17 1672752 1680916 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0269 K09613 - gmx:100817371 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0269 17 1672752 1680916 Lal21g0374 21 2526675 2530988 LSH